miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18073 3' -58.1 NC_004680.1 + 39021 0.66 0.608987
Target:  5'- --cCGAagCGCGCUaCACGUGGCcGCa -3'
miRNA:   3'- cuuGCUagGCGUGGaGUGCGCCGcCG- -5'
18073 3' -58.1 NC_004680.1 + 20152 0.68 0.494432
Target:  5'- cGggUGAUuuGUugUcgccggaggaUCAgGCGGCGGUg -3'
miRNA:   3'- -CuuGCUAggCGugG----------AGUgCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 41308 0.67 0.514655
Target:  5'- uGGACGAUgCCGCugCUgAuCGCcGcCGGCa -3'
miRNA:   3'- -CUUGCUA-GGCGugGAgU-GCGcC-GCCG- -5'
18073 3' -58.1 NC_004680.1 + 42666 0.67 0.545589
Target:  5'- cGACGA-CgGCGCCUCcuacacggAUGCcGCGGCg -3'
miRNA:   3'- cUUGCUaGgCGUGGAG--------UGCGcCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 25816 0.67 0.556036
Target:  5'- -uGCGuUCgGCACUgCG-GCGGCGGCc -3'
miRNA:   3'- cuUGCuAGgCGUGGaGUgCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 35159 0.66 0.577096
Target:  5'- --cUGGUCuugaCGCGCUUCGCGCGGUGu- -3'
miRNA:   3'- cuuGCUAG----GCGUGGAGUGCGCCGCcg -5'
18073 3' -58.1 NC_004680.1 + 51616 0.66 0.577096
Target:  5'- aGGGCGAgCCGCGCUggaACGaCGGCaacguguggacuGGCg -3'
miRNA:   3'- -CUUGCUaGGCGUGGag-UGC-GCCG------------CCG- -5'
18073 3' -58.1 NC_004680.1 + 21752 0.66 0.584511
Target:  5'- gGAACGGUgaGUgccACCUCGuCGCGGCcgaauaagugggcuGGCa -3'
miRNA:   3'- -CUUGCUAggCG---UGGAGU-GCGCCG--------------CCG- -5'
18073 3' -58.1 NC_004680.1 + 38581 0.66 0.598327
Target:  5'- uGGugGAUCCGUGgCUgGCccgguuggaGCGGCaGGCc -3'
miRNA:   3'- -CUugCUAGGCGUgGAgUG---------CGCCG-CCG- -5'
18073 3' -58.1 NC_004680.1 + 48413 0.69 0.445574
Target:  5'- cGGAUGAUCCGCGugUC-CugGaGGCGGUg -3'
miRNA:   3'- -CUUGCUAGGCGU--GGaGugCgCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 27252 0.69 0.445574
Target:  5'- --cUGAUCCaCACCcaggaAgGCGGCGGCg -3'
miRNA:   3'- cuuGCUAGGcGUGGag---UgCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 32385 0.69 0.444624
Target:  5'- --cUGGUCCGCGCCauuUCGUGCGGCcgucgucgcugcgGGCg -3'
miRNA:   3'- cuuGCUAGGCGUGG---AGUGCGCCG-------------CCG- -5'
18073 3' -58.1 NC_004680.1 + 42028 0.73 0.248148
Target:  5'- ---aGAUCUGCACg-CAgUGCGGCGGCg -3'
miRNA:   3'- cuugCUAGGCGUGgaGU-GCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 18433 0.73 0.254445
Target:  5'- cGGugGuGUCCGCua-UC-CGCGGCGGCg -3'
miRNA:   3'- -CUugC-UAGGCGuggAGuGCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 16647 0.72 0.274124
Target:  5'- --uCGAUCCGaCugCUgGCGCGGCGa- -3'
miRNA:   3'- cuuGCUAGGC-GugGAgUGCGCCGCcg -5'
18073 3' -58.1 NC_004680.1 + 5783 0.72 0.28095
Target:  5'- uGAcCGuAUCCGCGCUcugCACGUguacGGCGGCa -3'
miRNA:   3'- -CUuGC-UAGGCGUGGa--GUGCG----CCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 9205 0.71 0.3096
Target:  5'- uGugGAuUUCGCGCCggucaaugGCGCGGUGGCg -3'
miRNA:   3'- cUugCU-AGGCGUGGag------UGCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 59108 0.71 0.322434
Target:  5'- cGGCGAacUCCacGCcgACCacauacaaccccgaUCACGCGGCGGCg -3'
miRNA:   3'- cUUGCU--AGG--CG--UGG--------------AGUGCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 8114 0.71 0.32474
Target:  5'- uGAgGGUCCGCugCUgGaCGCGGauuCGGCg -3'
miRNA:   3'- cUUgCUAGGCGugGAgU-GCGCC---GCCG- -5'
18073 3' -58.1 NC_004680.1 + 39512 0.69 0.426797
Target:  5'- uAGCGAUCCGUgagaucGCCgauuugCAuCGCcgGGCGGCu -3'
miRNA:   3'- cUUGCUAGGCG------UGGa-----GU-GCG--CCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.