miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18073 3' -58.1 NC_004680.1 + 1926 0.68 0.484457
Target:  5'- --cCGAUCCGggaaccggccCGCC-CACGCGGCGa- -3'
miRNA:   3'- cuuGCUAGGC----------GUGGaGUGCGCCGCcg -5'
18073 3' -58.1 NC_004680.1 + 3419 0.66 0.618597
Target:  5'- uGGGgGAgaaguauUCCGCAgcaUCUCugGCuaaGGCGGCc -3'
miRNA:   3'- -CUUgCU-------AGGCGU---GGAGugCG---CCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 3705 0.72 0.28791
Target:  5'- cGAGCaGUCUGCGCCUCAguucaGCGGUcGCa -3'
miRNA:   3'- -CUUGcUAGGCGUGGAGUg----CGCCGcCG- -5'
18073 3' -58.1 NC_004680.1 + 5783 0.72 0.28095
Target:  5'- uGAcCGuAUCCGCGCUcugCACGUguacGGCGGCa -3'
miRNA:   3'- -CUuGC-UAGGCGUGGa--GUGCG----CCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 8114 0.71 0.32474
Target:  5'- uGAgGGUCCGCugCUgGaCGCGGauuCGGCg -3'
miRNA:   3'- cUUgCUAGGCGugGAgU-GCGCC---GCCG- -5'
18073 3' -58.1 NC_004680.1 + 8168 0.66 0.608987
Target:  5'- -cGCGcgCCGCACUUC---CGGCGGg -3'
miRNA:   3'- cuUGCuaGGCGUGGAGugcGCCGCCg -5'
18073 3' -58.1 NC_004680.1 + 8658 0.7 0.381987
Target:  5'- cGAACGGcgaaucgaacUCgGUgGCCUguucaCGCGCGGCGGCa -3'
miRNA:   3'- -CUUGCU----------AGgCG-UGGA-----GUGCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 8944 1.11 0.000424
Target:  5'- uGAACGAUCCGCACCUCACGCGGCGGCg -3'
miRNA:   3'- -CUUGCUAGGCGUGGAGUGCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 9205 0.71 0.3096
Target:  5'- uGugGAuUUCGCGCCggucaaugGCGCGGUGGCg -3'
miRNA:   3'- cUugCU-AGGCGUGGag------UGCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 9984 0.69 0.449385
Target:  5'- --cUGA-CCGCagcaacgccgaugauGCCUguCGCGGCGGCc -3'
miRNA:   3'- cuuGCUaGGCG---------------UGGAguGCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 10315 0.66 0.577096
Target:  5'- cAACuGAUCCauGCugACCUUGCcgGUGGCGGCg -3'
miRNA:   3'- cUUG-CUAGG--CG--UGGAGUG--CGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 12194 0.66 0.619666
Target:  5'- uGGCGGUagCCGCcCCgUC-CGCGGCaGCg -3'
miRNA:   3'- cUUGCUA--GGCGuGG-AGuGCGCCGcCG- -5'
18073 3' -58.1 NC_004680.1 + 16647 0.72 0.274124
Target:  5'- --uCGAUCCGaCugCUgGCGCGGCGa- -3'
miRNA:   3'- cuuGCUAGGC-GugGAgUGCGCCGCcg -5'
18073 3' -58.1 NC_004680.1 + 17196 0.67 0.545589
Target:  5'- uGACGA-CCGUguaACCggaCACGCGG-GGCc -3'
miRNA:   3'- cUUGCUaGGCG---UGGa--GUGCGCCgCCG- -5'
18073 3' -58.1 NC_004680.1 + 18433 0.73 0.254445
Target:  5'- cGGugGuGUCCGCua-UC-CGCGGCGGCg -3'
miRNA:   3'- -CUugC-UAGGCGuggAGuGCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 19278 0.67 0.545589
Target:  5'- cGAGCGGgucaCCGaCGCCUUcacaaucgACGaCGGCGGg -3'
miRNA:   3'- -CUUGCUa---GGC-GUGGAG--------UGC-GCCGCCg -5'
18073 3' -58.1 NC_004680.1 + 19523 0.67 0.545589
Target:  5'- aAAUGcUCaccgCGCACC-CAUGUGGUGGCg -3'
miRNA:   3'- cUUGCuAG----GCGUGGaGUGCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 20152 0.68 0.494432
Target:  5'- cGggUGAUuuGUugUcgccggaggaUCAgGCGGCGGUg -3'
miRNA:   3'- -CuuGCUAggCGugG----------AGUgCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 21752 0.66 0.584511
Target:  5'- gGAACGGUgaGUgccACCUCGuCGCGGCcgaauaagugggcuGGCa -3'
miRNA:   3'- -CUUGCUAggCG---UGGAGU-GCGCCG--------------CCG- -5'
18073 3' -58.1 NC_004680.1 + 22289 0.69 0.445574
Target:  5'- cGAACGA-CCGCACaaaCUUcgGCGCGGCcucgaaccccaGGCu -3'
miRNA:   3'- -CUUGCUaGGCGUG---GAG--UGCGCCG-----------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.