miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18074 5' -54.6 NC_004680.1 + 27922 0.66 0.77574
Target:  5'- --cGUCCACc-ACCGUccgGCCgCCGAGCu -3'
miRNA:   3'- uaaCAGGUGcuUGGCG---UGG-GGCUUGu -5'
18074 5' -54.6 NC_004680.1 + 30086 0.66 0.77574
Target:  5'- uUUGUCCcauucgGCGAGCUGgauaACCUCGGGCu -3'
miRNA:   3'- uAACAGG------UGCUUGGCg---UGGGGCUUGu -5'
18074 5' -54.6 NC_004680.1 + 40845 0.66 0.755295
Target:  5'- -aUGUCgAUG-ACUGCACCCUuGGCAu -3'
miRNA:   3'- uaACAGgUGCuUGGCGUGGGGcUUGU- -5'
18074 5' -54.6 NC_004680.1 + 43792 0.66 0.754259
Target:  5'- --gGUCCAgGAACUGCaacggugGCCCCucaGACAg -3'
miRNA:   3'- uaaCAGGUgCUUGGCG-------UGGGGc--UUGU- -5'
18074 5' -54.6 NC_004680.1 + 11802 0.66 0.744877
Target:  5'- gGUUGUUCugGuACUGCGggCCGAACAc -3'
miRNA:   3'- -UAACAGGugCuUGGCGUggGGCUUGU- -5'
18074 5' -54.6 NC_004680.1 + 23213 0.66 0.734343
Target:  5'- --cGUCCACGAcguCUGC-UCCCGcGCAu -3'
miRNA:   3'- uaaCAGGUGCUu--GGCGuGGGGCuUGU- -5'
18074 5' -54.6 NC_004680.1 + 938 0.67 0.723706
Target:  5'- --cGUCaCAcCGAACCgGCGCCuCCGggUg -3'
miRNA:   3'- uaaCAG-GU-GCUUGG-CGUGG-GGCuuGu -5'
18074 5' -54.6 NC_004680.1 + 53870 0.67 0.723706
Target:  5'- ---cUCCACGGGCUGCACCugccucggugCCGcACAu -3'
miRNA:   3'- uaacAGGUGCUUGGCGUGG----------GGCuUGU- -5'
18074 5' -54.6 NC_004680.1 + 30802 0.67 0.702167
Target:  5'- ---aUCCAaacucucuUGGAUCGCAgCCCGGACAg -3'
miRNA:   3'- uaacAGGU--------GCUUGGCGUgGGGCUUGU- -5'
18074 5' -54.6 NC_004680.1 + 6776 0.67 0.691288
Target:  5'- -aUGUuccagUCACGAACCGCaACCacauCGAACAc -3'
miRNA:   3'- uaACA-----GGUGCUUGGCG-UGGg---GCUUGU- -5'
18074 5' -54.6 NC_004680.1 + 6943 0.67 0.691288
Target:  5'- --cGUCCAUGAACuCGUugacGCCCUGAu-- -3'
miRNA:   3'- uaaCAGGUGCUUG-GCG----UGGGGCUugu -5'
18074 5' -54.6 NC_004680.1 + 43871 0.67 0.679256
Target:  5'- -cUGUCCaACGAcccgaucACCGCAUCCacacgGGACAg -3'
miRNA:   3'- uaACAGG-UGCU-------UGGCGUGGGg----CUUGU- -5'
18074 5' -54.6 NC_004680.1 + 41147 0.67 0.677062
Target:  5'- --cGUCCAgCGGcacaagcucauccaGCCGCACCCC-AACc -3'
miRNA:   3'- uaaCAGGU-GCU--------------UGGCGUGGGGcUUGu -5'
18074 5' -54.6 NC_004680.1 + 29494 0.68 0.647309
Target:  5'- ----aCUGCGAACCGaaCGCCUCGAACGc -3'
miRNA:   3'- uaacaGGUGCUUGGC--GUGGGGCUUGU- -5'
18074 5' -54.6 NC_004680.1 + 13316 0.68 0.647309
Target:  5'- -aUG-CCGCG-GCCGguCCCCGAAa- -3'
miRNA:   3'- uaACaGGUGCuUGGCguGGGGCUUgu -5'
18074 5' -54.6 NC_004680.1 + 52075 0.68 0.636253
Target:  5'- --cGUCgCACGGACCGCugUauCCGuACAa -3'
miRNA:   3'- uaaCAG-GUGCUUGGCGugG--GGCuUGU- -5'
18074 5' -54.6 NC_004680.1 + 28261 0.68 0.625192
Target:  5'- -gUGUCCACGAccgGCCGCggaagguaGCCCauGACGu -3'
miRNA:   3'- uaACAGGUGCU---UGGCG--------UGGGgcUUGU- -5'
18074 5' -54.6 NC_004680.1 + 18694 0.69 0.592087
Target:  5'- --gGUCCGCGAugcCCGCACCaacaCCGGGa- -3'
miRNA:   3'- uaaCAGGUGCUu--GGCGUGG----GGCUUgu -5'
18074 5' -54.6 NC_004680.1 + 46470 0.69 0.559287
Target:  5'- -aUGUCCcaccuGCGGAUC-UGCCCCGGACAc -3'
miRNA:   3'- uaACAGG-----UGCUUGGcGUGGGGCUUGU- -5'
18074 5' -54.6 NC_004680.1 + 8068 0.69 0.559287
Target:  5'- --cG-CCACGAACCGCACCgaGuACGa -3'
miRNA:   3'- uaaCaGGUGCUUGGCGUGGggCuUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.