miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18077 3' -54.8 NC_004680.1 + 9786 1.1 0.001122
Target:  5'- uUCGCCGCGAACCCAUCCACAAUGCGAg -3'
miRNA:   3'- -AGCGGCGCUUGGGUAGGUGUUACGCU- -5'
18077 3' -54.8 NC_004680.1 + 45713 0.75 0.291695
Target:  5'- aUGaaGCGGACCCAUCCGCGGucUGCa- -3'
miRNA:   3'- aGCggCGCUUGGGUAGGUGUU--ACGcu -5'
18077 3' -54.8 NC_004680.1 + 41992 0.74 0.307312
Target:  5'- gCGCCGCGAAUgcguugcggucacaaCCGUCCcugaagaucugcacGCAGUGCGGc -3'
miRNA:   3'- aGCGGCGCUUG---------------GGUAGG--------------UGUUACGCU- -5'
18077 3' -54.8 NC_004680.1 + 25912 0.74 0.321986
Target:  5'- cUCGCCGUGGuggcgGCCgCcgCCGCAGUGcCGAa -3'
miRNA:   3'- -AGCGGCGCU-----UGG-GuaGGUGUUAC-GCU- -5'
18077 3' -54.8 NC_004680.1 + 44546 0.74 0.337991
Target:  5'- aUGCCGuCGAcACCCAUCCAgUAGUGgGAc -3'
miRNA:   3'- aGCGGC-GCU-UGGGUAGGU-GUUACgCU- -5'
18077 3' -54.8 NC_004680.1 + 59054 0.73 0.36221
Target:  5'- cCGCCGCGAcaacuggACCUG-CCaACAAUGCGGc -3'
miRNA:   3'- aGCGGCGCU-------UGGGUaGG-UGUUACGCU- -5'
18077 3' -54.8 NC_004680.1 + 18050 0.72 0.416962
Target:  5'- uUCGCCGC--GCCCGUaCCAUcgccgcugcgagAAUGCGAc -3'
miRNA:   3'- -AGCGGCGcuUGGGUA-GGUG------------UUACGCU- -5'
18077 3' -54.8 NC_004680.1 + 24295 0.72 0.426409
Target:  5'- gUGCCGgGAagggugguGCCCAUCCACA-UGCc- -3'
miRNA:   3'- aGCGGCgCU--------UGGGUAGGUGUuACGcu -5'
18077 3' -54.8 NC_004680.1 + 39032 0.71 0.445678
Target:  5'- aUCGCgGCGAGuuCcUCCGCAGUGgCGGu -3'
miRNA:   3'- -AGCGgCGCUUggGuAGGUGUUAC-GCU- -5'
18077 3' -54.8 NC_004680.1 + 19325 0.71 0.465424
Target:  5'- cCGCCG-GAACCUguAUCCACg--GCGAu -3'
miRNA:   3'- aGCGGCgCUUGGG--UAGGUGuuaCGCU- -5'
18077 3' -54.8 NC_004680.1 + 15528 0.71 0.465424
Target:  5'- gUCGCCGaUGGugGCCCG--CACAGUGCGGa -3'
miRNA:   3'- -AGCGGC-GCU--UGGGUagGUGUUACGCU- -5'
18077 3' -54.8 NC_004680.1 + 40790 0.7 0.537779
Target:  5'- cCGCCGUugcucucaccGACCCggCCACAugGUGCGAc -3'
miRNA:   3'- aGCGGCGc---------UUGGGuaGGUGU--UACGCU- -5'
18077 3' -54.8 NC_004680.1 + 10986 0.7 0.537779
Target:  5'- cUCGCCGuCGGGCUgGUCCugAAU-CGGa -3'
miRNA:   3'- -AGCGGC-GCUUGGgUAGGugUUAcGCU- -5'
18077 3' -54.8 NC_004680.1 + 33111 0.7 0.552743
Target:  5'- cCGCCGCGAcgucgaagaggGCCgcaucgccaccaccuCAUCCACAAcUGUGGa -3'
miRNA:   3'- aGCGGCGCU-----------UGG---------------GUAGGUGUU-ACGCU- -5'
18077 3' -54.8 NC_004680.1 + 2675 0.69 0.569994
Target:  5'- cCGUgGCGGAUCagGUCCGCuAUGCGGu -3'
miRNA:   3'- aGCGgCGCUUGGg-UAGGUGuUACGCU- -5'
18077 3' -54.8 NC_004680.1 + 17058 0.69 0.591735
Target:  5'- gCGCCGCcaacacGAACCCGUCaGCGGU-CGAg -3'
miRNA:   3'- aGCGGCG------CUUGGGUAGgUGUUAcGCU- -5'
18077 3' -54.8 NC_004680.1 + 49983 0.69 0.591735
Target:  5'- cCGCCGCGcACCC--UgGCAGUGgGAg -3'
miRNA:   3'- aGCGGCGCuUGGGuaGgUGUUACgCU- -5'
18077 3' -54.8 NC_004680.1 + 40647 0.69 0.602661
Target:  5'- aCGCgCGCaGAGCCCcacgCCACGacGUGCGc -3'
miRNA:   3'- aGCG-GCG-CUUGGGua--GGUGU--UACGCu -5'
18077 3' -54.8 NC_004680.1 + 27343 0.69 0.602661
Target:  5'- gUCGCCGCcgccGCCU-UCCugGGUGUGGa -3'
miRNA:   3'- -AGCGGCGcu--UGGGuAGGugUUACGCU- -5'
18077 3' -54.8 NC_004680.1 + 16922 0.69 0.602661
Target:  5'- aCGgaUGUGGACCCGUCCcCAGUcGCGGg -3'
miRNA:   3'- aGCg-GCGCUUGGGUAGGuGUUA-CGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.