miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18077 3' -54.8 NC_004680.1 + 1618 0.66 0.763974
Target:  5'- aCGCCuGCGAGCCCGacuuacgCCACcGAUuaGAu -3'
miRNA:   3'- aGCGG-CGCUUGGGUa------GGUG-UUAcgCU- -5'
18077 3' -54.8 NC_004680.1 + 1701 0.66 0.763974
Target:  5'- cCaCCGCG-ACCCGUCaaacccaGCAGUGaCGAa -3'
miRNA:   3'- aGcGGCGCuUGGGUAGg------UGUUAC-GCU- -5'
18077 3' -54.8 NC_004680.1 + 1955 0.67 0.711701
Target:  5'- cCGCCGCcaccaacAGCCCAcUCCACAAccCGAu -3'
miRNA:   3'- aGCGGCGc------UUGGGU-AGGUGUUacGCU- -5'
18077 3' -54.8 NC_004680.1 + 2675 0.69 0.569994
Target:  5'- cCGUgGCGGAUCagGUCCGCuAUGCGGu -3'
miRNA:   3'- aGCGgCGCUUGGg-UAGGUGuUACGCU- -5'
18077 3' -54.8 NC_004680.1 + 6986 0.66 0.784021
Target:  5'- gUCGgCGCG-ACUgAUCCGCAG-GCGc -3'
miRNA:   3'- -AGCgGCGCuUGGgUAGGUGUUaCGCu -5'
18077 3' -54.8 NC_004680.1 + 7101 0.66 0.763974
Target:  5'- gUCGuuGUGcgccGACCCGaacUCCACGAgaUGCGc -3'
miRNA:   3'- -AGCggCGC----UUGGGU---AGGUGUU--ACGCu -5'
18077 3' -54.8 NC_004680.1 + 8792 0.68 0.635551
Target:  5'- cUGCCgGCGGagACCCGUCC-CGGcGCGGu -3'
miRNA:   3'- aGCGG-CGCU--UGGGUAGGuGUUaCGCU- -5'
18077 3' -54.8 NC_004680.1 + 9141 0.66 0.763974
Target:  5'- -aGuuGCuGGACCUGUUCGgGGUGCGGu -3'
miRNA:   3'- agCggCG-CUUGGGUAGGUgUUACGCU- -5'
18077 3' -54.8 NC_004680.1 + 9786 1.1 0.001122
Target:  5'- uUCGCCGCGAACCCAUCCACAAUGCGAg -3'
miRNA:   3'- -AGCGGCGCUUGGGUAGGUGUUACGCU- -5'
18077 3' -54.8 NC_004680.1 + 9890 0.68 0.668413
Target:  5'- cCGCCGCGAcagGCaUCAUCgGCGuugcUGCGGu -3'
miRNA:   3'- aGCGGCGCU---UG-GGUAGgUGUu---ACGCU- -5'
18077 3' -54.8 NC_004680.1 + 10986 0.7 0.537779
Target:  5'- cUCGCCGuCGGGCUgGUCCugAAU-CGGa -3'
miRNA:   3'- -AGCGGC-GCUUGGgUAGGugUUAcGCU- -5'
18077 3' -54.8 NC_004680.1 + 11305 0.66 0.732923
Target:  5'- aUCGUCGUaucugGAugCCcgCCACAAacugGCGGa -3'
miRNA:   3'- -AGCGGCG-----CUugGGuaGGUGUUa---CGCU- -5'
18077 3' -54.8 NC_004680.1 + 11748 0.66 0.743389
Target:  5'- aCGaCCGgGGuucuuACCCGUCUGcCGGUGCGGc -3'
miRNA:   3'- aGC-GGCgCU-----UGGGUAGGU-GUUACGCU- -5'
18077 3' -54.8 NC_004680.1 + 11833 0.67 0.690168
Target:  5'- gUCGCCGCGcGACUUcgCgCACAGcGUGAu -3'
miRNA:   3'- -AGCGGCGC-UUGGGuaG-GUGUUaCGCU- -5'
18077 3' -54.8 NC_004680.1 + 15528 0.71 0.465424
Target:  5'- gUCGCCGaUGGugGCCCG--CACAGUGCGGa -3'
miRNA:   3'- -AGCGGC-GCU--UGGGUagGUGUUACGCU- -5'
18077 3' -54.8 NC_004680.1 + 15631 0.66 0.743389
Target:  5'- -gGCC-UGAACgguuuCCAUCCGCAcuGUGCGGg -3'
miRNA:   3'- agCGGcGCUUG-----GGUAGGUGU--UACGCU- -5'
18077 3' -54.8 NC_004680.1 + 16015 0.66 0.77407
Target:  5'- gUGCUGCcAACCC-UCCGguGUGUGGu -3'
miRNA:   3'- aGCGGCGcUUGGGuAGGUguUACGCU- -5'
18077 3' -54.8 NC_004680.1 + 16922 0.69 0.602661
Target:  5'- aCGgaUGUGGACCCGUCCcCAGUcGCGGg -3'
miRNA:   3'- aGCg-GCGCUUGGGUAGGuGUUA-CGCU- -5'
18077 3' -54.8 NC_004680.1 + 17058 0.69 0.591735
Target:  5'- gCGCCGCcaacacGAACCCGUCaGCGGU-CGAg -3'
miRNA:   3'- aGCGGCG------CUUGGGUAGgUGUUAcGCU- -5'
18077 3' -54.8 NC_004680.1 + 18050 0.72 0.416962
Target:  5'- uUCGCCGC--GCCCGUaCCAUcgccgcugcgagAAUGCGAc -3'
miRNA:   3'- -AGCGGCGcuUGGGUA-GGUG------------UUACGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.