miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18077 3' -54.8 NC_004680.1 + 41992 0.74 0.307312
Target:  5'- gCGCCGCGAAUgcguugcggucacaaCCGUCCcugaagaucugcacGCAGUGCGGc -3'
miRNA:   3'- aGCGGCGCUUG---------------GGUAGG--------------UGUUACGCU- -5'
18077 3' -54.8 NC_004680.1 + 34143 0.67 0.711701
Target:  5'- gCGCaGCGGAUCUAUgCGCA-UGCGGa -3'
miRNA:   3'- aGCGgCGCUUGGGUAgGUGUuACGCU- -5'
18077 3' -54.8 NC_004680.1 + 11305 0.66 0.732923
Target:  5'- aUCGUCGUaucugGAugCCcgCCACAAacugGCGGa -3'
miRNA:   3'- -AGCGGCG-----CUugGGuaGGUGUUa---CGCU- -5'
18077 3' -54.8 NC_004680.1 + 11748 0.66 0.743389
Target:  5'- aCGaCCGgGGuucuuACCCGUCUGcCGGUGCGGc -3'
miRNA:   3'- aGC-GGCgCU-----UGGGUAGGU-GUUACGCU- -5'
18077 3' -54.8 NC_004680.1 + 36147 0.66 0.753743
Target:  5'- aCGCCG-GAcgcauCCCAUgcCCGCAGggcgGCGAg -3'
miRNA:   3'- aGCGGCgCUu----GGGUA--GGUGUUa---CGCU- -5'
18077 3' -54.8 NC_004680.1 + 9141 0.66 0.763974
Target:  5'- -aGuuGCuGGACCUGUUCGgGGUGCGGu -3'
miRNA:   3'- agCggCG-CUUGGGUAGGUgUUACGCU- -5'
18077 3' -54.8 NC_004680.1 + 37433 0.66 0.763974
Target:  5'- aUCGaCCaGCuGACCauCAUCCGCAAcGCGAu -3'
miRNA:   3'- -AGC-GG-CGcUUGG--GUAGGUGUUaCGCU- -5'
18077 3' -54.8 NC_004680.1 + 6986 0.66 0.784021
Target:  5'- gUCGgCGCG-ACUgAUCCGCAG-GCGc -3'
miRNA:   3'- -AGCgGCGCuUGGgUAGGUGUUaCGCu -5'
18077 3' -54.8 NC_004680.1 + 55866 0.66 0.784021
Target:  5'- cCGCCGCGAcaACCaucguCGUCCAaccgguaAcgGCGGc -3'
miRNA:   3'- aGCGGCGCU--UGG-----GUAGGUg------UuaCGCU- -5'
18077 3' -54.8 NC_004680.1 + 55440 0.67 0.700968
Target:  5'- cUCGCCGCGGcgaucACCCAaa-ACuAUGUGAu -3'
miRNA:   3'- -AGCGGCGCU-----UGGGUaggUGuUACGCU- -5'
18077 3' -54.8 NC_004680.1 + 11833 0.67 0.690168
Target:  5'- gUCGCCGCGcGACUUcgCgCACAGcGUGAu -3'
miRNA:   3'- -AGCGGCGC-UUGGGuaG-GUGUUaCGCU- -5'
18077 3' -54.8 NC_004680.1 + 59054 0.73 0.36221
Target:  5'- cCGCCGCGAcaacuggACCUG-CCaACAAUGCGGc -3'
miRNA:   3'- aGCGGCGCU-------UGGGUaGG-UGUUACGCU- -5'
18077 3' -54.8 NC_004680.1 + 15528 0.71 0.465424
Target:  5'- gUCGCCGaUGGugGCCCG--CACAGUGCGGa -3'
miRNA:   3'- -AGCGGC-GCU--UGGGUagGUGUUACGCU- -5'
18077 3' -54.8 NC_004680.1 + 40790 0.7 0.537779
Target:  5'- cCGCCGUugcucucaccGACCCggCCACAugGUGCGAc -3'
miRNA:   3'- aGCGGCGc---------UUGGGuaGGUGU--UACGCU- -5'
18077 3' -54.8 NC_004680.1 + 33111 0.7 0.552743
Target:  5'- cCGCCGCGAcgucgaagaggGCCgcaucgccaccaccuCAUCCACAAcUGUGGa -3'
miRNA:   3'- aGCGGCGCU-----------UGG---------------GUAGGUGUU-ACGCU- -5'
18077 3' -54.8 NC_004680.1 + 2675 0.69 0.569994
Target:  5'- cCGUgGCGGAUCagGUCCGCuAUGCGGu -3'
miRNA:   3'- aGCGgCGCUUGGg-UAGGUGuUACGCU- -5'
18077 3' -54.8 NC_004680.1 + 16922 0.69 0.602661
Target:  5'- aCGgaUGUGGACCCGUCCcCAGUcGCGGg -3'
miRNA:   3'- aGCg-GCGCUUGGGUAGGuGUUA-CGCU- -5'
18077 3' -54.8 NC_004680.1 + 8792 0.68 0.635551
Target:  5'- cUGCCgGCGGagACCCGUCC-CGGcGCGGu -3'
miRNA:   3'- aGCGG-CGCU--UGGGUAGGuGUUaCGCU- -5'
18077 3' -54.8 NC_004680.1 + 9890 0.68 0.668413
Target:  5'- cCGCCGCGAcagGCaUCAUCgGCGuugcUGCGGu -3'
miRNA:   3'- aGCGGCGCU---UG-GGUAGgUGUu---ACGCU- -5'
18077 3' -54.8 NC_004680.1 + 9786 1.1 0.001122
Target:  5'- uUCGCCGCGAACCCAUCCACAAUGCGAg -3'
miRNA:   3'- -AGCGGCGCUUGGGUAGGUGUUACGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.