miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18079 3' -56.8 NC_004680.1 + 27828 0.66 0.656094
Target:  5'- -gGUUGgccgCAGCU-CGGCGGCcggACGGUGg -3'
miRNA:   3'- ugCAACa---GUCGGuGUCGCCG---UGUCGC- -5'
18079 3' -56.8 NC_004680.1 + 41155 0.66 0.645174
Target:  5'- uGCcUUGUC-GUC-CAGCGGCACAaGCu -3'
miRNA:   3'- -UGcAACAGuCGGuGUCGCCGUGU-CGc -5'
18079 3' -56.8 NC_004680.1 + 3873 0.66 0.644081
Target:  5'- cACGUacggcacUGUCGgaagguaagagcGUCGCAGCGGCACuccgugccggucAGCGc -3'
miRNA:   3'- -UGCA-------ACAGU------------CGGUGUCGCCGUG------------UCGC- -5'
18079 3' -56.8 NC_004680.1 + 53235 0.66 0.634242
Target:  5'- cACGagGUUGG-UGCAGCGGCAgGGCa -3'
miRNA:   3'- -UGCaaCAGUCgGUGUCGCCGUgUCGc -5'
18079 3' -56.8 NC_004680.1 + 44855 0.66 0.623308
Target:  5'- gGCGcgUGUCc-CCACGGUGGCGgAGUa -3'
miRNA:   3'- -UGCa-ACAGucGGUGUCGCCGUgUCGc -5'
18079 3' -56.8 NC_004680.1 + 27208 0.66 0.623308
Target:  5'- ----gGUCGGCCaacaACAGCGccCGCAGCGg -3'
miRNA:   3'- ugcaaCAGUCGG----UGUCGCc-GUGUCGC- -5'
18079 3' -56.8 NC_004680.1 + 2494 0.66 0.601472
Target:  5'- gGCGUUG-CGGgCGCGGCG-CAUuuGGCGg -3'
miRNA:   3'- -UGCAACaGUCgGUGUCGCcGUG--UCGC- -5'
18079 3' -56.8 NC_004680.1 + 7384 0.66 0.601472
Target:  5'- uCGUUGgugcgucaacUCGGCCucauucuCAGCGGCcucaucagacGCGGCGa -3'
miRNA:   3'- uGCAAC----------AGUCGGu------GUCGCCG----------UGUCGC- -5'
18079 3' -56.8 NC_004680.1 + 25816 0.67 0.590589
Target:  5'- uGCGU--UCGGCacuGCGGCGGCggccgccaccACGGCGa -3'
miRNA:   3'- -UGCAacAGUCGg--UGUCGCCG----------UGUCGC- -5'
18079 3' -56.8 NC_004680.1 + 34452 0.67 0.57974
Target:  5'- cGCGgagUGUUucGCCGCcGCGGUAguCGGCGa -3'
miRNA:   3'- -UGCa--ACAGu-CGGUGuCGCCGU--GUCGC- -5'
18079 3' -56.8 NC_004680.1 + 25711 0.67 0.558178
Target:  5'- uGCGgcGUCGGCgACGGCGGgGaugccgagGGCGa -3'
miRNA:   3'- -UGCaaCAGUCGgUGUCGCCgUg-------UCGC- -5'
18079 3' -56.8 NC_004680.1 + 42818 0.67 0.558178
Target:  5'- gGCGguccCAGCCACGaccggggaacuuGCGGCGCAacGCGg -3'
miRNA:   3'- -UGCaacaGUCGGUGU------------CGCCGUGU--CGC- -5'
18079 3' -56.8 NC_004680.1 + 33169 0.67 0.557105
Target:  5'- -aGUUGUUugaguuuGGCCAUGGCGGUGuuGCGg -3'
miRNA:   3'- ugCAACAG-------UCGGUGUCGCCGUguCGC- -5'
18079 3' -56.8 NC_004680.1 + 41449 0.67 0.53685
Target:  5'- uCGUugagacUGUCAGCUuCAGCguguGGUGCGGCGa -3'
miRNA:   3'- uGCA------ACAGUCGGuGUCG----CCGUGUCGC- -5'
18079 3' -56.8 NC_004680.1 + 54388 0.68 0.526291
Target:  5'- gGCGUaGUaCGcCCACAGUuccgggucuGGCGCAGCGa -3'
miRNA:   3'- -UGCAaCA-GUcGGUGUCG---------CCGUGUCGC- -5'
18079 3' -56.8 NC_004680.1 + 54922 0.68 0.526291
Target:  5'- cGCGgaGgu-GUUugAGCGGCACGGCa -3'
miRNA:   3'- -UGCaaCaguCGGugUCGCCGUGUCGc -5'
18079 3' -56.8 NC_004680.1 + 12603 0.68 0.515811
Target:  5'- gGCGgUG-CAGgC-CGGCGGCAUGGCGc -3'
miRNA:   3'- -UGCaACaGUCgGuGUCGCCGUGUCGC- -5'
18079 3' -56.8 NC_004680.1 + 16677 0.68 0.484905
Target:  5'- -aGUUG-CGGCCGCagGGCGGUAuCGGUGu -3'
miRNA:   3'- ugCAACaGUCGGUG--UCGCCGU-GUCGC- -5'
18079 3' -56.8 NC_004680.1 + 34667 0.68 0.481863
Target:  5'- uCGUUGUUGcgugcggagacgauGCCuacgACGGCGaGCACAGCGa -3'
miRNA:   3'- uGCAACAGU--------------CGG----UGUCGC-CGUGUCGC- -5'
18079 3' -56.8 NC_004680.1 + 40243 0.69 0.425951
Target:  5'- ----gGUCAGCCAUGGgGGCGuuGCGg -3'
miRNA:   3'- ugcaaCAGUCGGUGUCgCCGUguCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.