miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18081 5' -50.6 NC_004680.1 + 44638 0.66 0.953914
Target:  5'- gGGCGUCGa-UCAUGCGGCGuuCGUCGg -3'
miRNA:   3'- gUUGCAGCacAGUAUGCCGUu-GUGGC- -5'
18081 5' -50.6 NC_004680.1 + 33318 0.66 0.951269
Target:  5'- uGugGUUGUGgaugGCGGCccgguagucguugagGACGCCGg -3'
miRNA:   3'- gUugCAGCACaguaUGCCG---------------UUGUGGC- -5'
18081 5' -50.6 NC_004680.1 + 46595 0.66 0.946639
Target:  5'- gAACGUCG-GUUGUucgucccgacuuggcGCGGCAGCGgguguCCGg -3'
miRNA:   3'- gUUGCAGCaCAGUA---------------UGCCGUUGU-----GGC- -5'
18081 5' -50.6 NC_004680.1 + 25710 0.66 0.939683
Target:  5'- gCGGCGUCGgcgacgGCGGgGAUGCCGa -3'
miRNA:   3'- -GUUGCAGCacaguaUGCCgUUGUGGC- -5'
18081 5' -50.6 NC_004680.1 + 18451 0.66 0.928777
Target:  5'- gCGGCGgCGUG-CAUACGGUugagaacACGCUGg -3'
miRNA:   3'- -GUUGCaGCACaGUAUGCCGu------UGUGGC- -5'
18081 5' -50.6 NC_004680.1 + 19124 0.66 0.928202
Target:  5'- cCGACGUCGcagauugUGUCGcugGCGGC--CACCa -3'
miRNA:   3'- -GUUGCAGC-------ACAGUa--UGCCGuuGUGGc -5'
18081 5' -50.6 NC_004680.1 + 6255 0.67 0.903525
Target:  5'- ---gGUCGcugcacGUCAccuUACGGUGACGCCGg -3'
miRNA:   3'- guugCAGCa-----CAGU---AUGCCGUUGUGGC- -5'
18081 5' -50.6 NC_004680.1 + 29067 0.68 0.889204
Target:  5'- --cUGUCaGUGUC---CGGCGGCGCCGc -3'
miRNA:   3'- guuGCAG-CACAGuauGCCGUUGUGGC- -5'
18081 5' -50.6 NC_004680.1 + 43229 0.68 0.889204
Target:  5'- uGGCGUCGgcacGUCAU-CGaGCAguACACCa -3'
miRNA:   3'- gUUGCAGCa---CAGUAuGC-CGU--UGUGGc -5'
18081 5' -50.6 NC_004680.1 + 21534 0.68 0.884694
Target:  5'- aCGAUGUUGUGUCcgugggaacccccacGUucgcgcACGGCAacgGCACCGc -3'
miRNA:   3'- -GUUGCAGCACAG---------------UA------UGCCGU---UGUGGC- -5'
18081 5' -50.6 NC_004680.1 + 40489 0.68 0.873796
Target:  5'- -cACGUCGUGgCGUGgGGCucuGCGCaCGu -3'
miRNA:   3'- guUGCAGCACaGUAUgCCGu--UGUG-GC- -5'
18081 5' -50.6 NC_004680.1 + 40657 0.68 0.873796
Target:  5'- -cACGUCGUGgCGUGgGGCucuGCGCaCGu -3'
miRNA:   3'- guUGCAGCACaGUAUgCCGu--UGUG-GC- -5'
18081 5' -50.6 NC_004680.1 + 55000 0.68 0.873796
Target:  5'- aAACGUCGggcggccagGaUCAUGCGGCGcauggcuCGCCGc -3'
miRNA:   3'- gUUGCAGCa--------C-AGUAUGCCGUu------GUGGC- -5'
18081 5' -50.6 NC_004680.1 + 12255 0.68 0.865698
Target:  5'- cCAcCGUCGgaaCGgauaccuggGCGGCAGCGCCGg -3'
miRNA:   3'- -GUuGCAGCacaGUa--------UGCCGUUGUGGC- -5'
18081 5' -50.6 NC_004680.1 + 40537 0.69 0.848753
Target:  5'- -cGCGUCGUGgCGUGgGGCucuGCGCaCGu -3'
miRNA:   3'- guUGCAGCACaGUAUgCCGu--UGUG-GC- -5'
18081 5' -50.6 NC_004680.1 + 40585 0.69 0.848753
Target:  5'- -cGCGUCGUGgCGUGgGGCucuGCGCaCGu -3'
miRNA:   3'- guUGCAGCACaGUAUgCCGu--UGUG-GC- -5'
18081 5' -50.6 NC_004680.1 + 20103 0.69 0.848753
Target:  5'- --cCGuUCGUccCAUacgGCGGCAACACCGg -3'
miRNA:   3'- guuGC-AGCAcaGUA---UGCCGUUGUGGC- -5'
18081 5' -50.6 NC_004680.1 + 13140 0.69 0.848753
Target:  5'- gCGAgGUCGUaccaucCGUGCGGCGuCACCGc -3'
miRNA:   3'- -GUUgCAGCAca----GUAUGCCGUuGUGGC- -5'
18081 5' -50.6 NC_004680.1 + 5040 0.69 0.84788
Target:  5'- -cGCGccuucuuUCGcucGUCAgGCGGCAGCGCCGc -3'
miRNA:   3'- guUGC-------AGCa--CAGUaUGCCGUUGUGGC- -5'
18081 5' -50.6 NC_004680.1 + 57838 0.69 0.839922
Target:  5'- uGGCGUCGUcGUCGUACca-GGCACCu -3'
miRNA:   3'- gUUGCAGCA-CAGUAUGccgUUGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.