miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18082 3' -56.3 NC_004680.1 + 11761 1.14 0.000469
Target:  5'- aGGACACCCAUCAAACCGUGGCCGCCCu -3'
miRNA:   3'- -CCUGUGGGUAGUUUGGCACCGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 12789 0.79 0.131541
Target:  5'- uGGGCGCCgAUCGcggcGACC-UGGCCGCCg -3'
miRNA:   3'- -CCUGUGGgUAGU----UUGGcACCGGCGGg -5'
18082 3' -56.3 NC_004680.1 + 30239 0.78 0.15063
Target:  5'- uGGACGCguuCUGUCAGAUCGuUGGCCuGCCCg -3'
miRNA:   3'- -CCUGUG---GGUAGUUUGGC-ACCGG-CGGG- -5'
18082 3' -56.3 NC_004680.1 + 19795 0.77 0.191405
Target:  5'- --cCACCagguggCGuACCGUGGCCGCCCa -3'
miRNA:   3'- ccuGUGGgua---GUuUGGCACCGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 33630 0.76 0.223719
Target:  5'- cGGGCGCCCGUCAggaAACCGgcGGCgaucCGCaCCg -3'
miRNA:   3'- -CCUGUGGGUAGU---UUGGCa-CCG----GCG-GG- -5'
18082 3' -56.3 NC_004680.1 + 33129 0.74 0.287761
Target:  5'- aGGACACCCAUUuguAGCgGcGGuuGCCg -3'
miRNA:   3'- -CCUGUGGGUAGu--UUGgCaCCggCGGg -5'
18082 3' -56.3 NC_004680.1 + 42737 0.74 0.287761
Target:  5'- aGGCGCCguCGUCGAGCaGgcgGGCCGCCUg -3'
miRNA:   3'- cCUGUGG--GUAGUUUGgCa--CCGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 11104 0.74 0.287761
Target:  5'- cGGCGCCCAagCAGaacGCCGcGGCCGUUCg -3'
miRNA:   3'- cCUGUGGGUa-GUU---UGGCaCCGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 13235 0.73 0.317153
Target:  5'- cGGCGguCCgGUCGggGACCGccaGGCCGCCCa -3'
miRNA:   3'- cCUGU--GGgUAGU--UUGGCa--CCGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 8799 0.73 0.332677
Target:  5'- cGGAgACCCGUCccGGCgCGgucaaggGGCCGCCg -3'
miRNA:   3'- -CCUgUGGGUAGu-UUG-GCa------CCGGCGGg -5'
18082 3' -56.3 NC_004680.1 + 3536 0.73 0.340645
Target:  5'- aGACGCCCA-CGAcUCGccGGCCGCCUu -3'
miRNA:   3'- cCUGUGGGUaGUUuGGCa-CCGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 11171 0.72 0.348751
Target:  5'- uGGGCGCCgG---GGCCGccaccaaGGCCGCCCg -3'
miRNA:   3'- -CCUGUGGgUaguUUGGCa------CCGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 35876 0.72 0.365371
Target:  5'- aGGAagGCCgAUCGGACgCGaaGCCGCCCa -3'
miRNA:   3'- -CCUg-UGGgUAGUUUG-GCacCGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 19386 0.72 0.365371
Target:  5'- cGGCACCgGgaacACCGUGGCCGCg- -3'
miRNA:   3'- cCUGUGGgUaguuUGGCACCGGCGgg -5'
18082 3' -56.3 NC_004680.1 + 53876 0.72 0.38253
Target:  5'- gGGcuGCACCUGccUCGGuGCCGcacaucUGGCCGCCCg -3'
miRNA:   3'- -CC--UGUGGGU--AGUU-UGGC------ACCGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 12869 0.71 0.400217
Target:  5'- aGGACaucgACCCG-CAAGCC---GCCGCCCa -3'
miRNA:   3'- -CCUG----UGGGUaGUUUGGcacCGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 12405 0.71 0.400217
Target:  5'- cGGCACCCG--AAGCgGcGGUCGCCCc -3'
miRNA:   3'- cCUGUGGGUagUUUGgCaCCGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 6040 0.71 0.409254
Target:  5'- cGGGCGCagguCGUCAAugggcGCgUGUGGCUGCCUg -3'
miRNA:   3'- -CCUGUGg---GUAGUU-----UG-GCACCGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 39276 0.71 0.418417
Target:  5'- cGACuACCCGgaaugcUCAGcacGCCcacUGGCCGCCCu -3'
miRNA:   3'- cCUG-UGGGU------AGUU---UGGc--ACCGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 26692 0.7 0.446637
Target:  5'- -cGCACCCG-CGAACa--GGUCGCCCg -3'
miRNA:   3'- ccUGUGGGUaGUUUGgcaCCGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.