miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18082 3' -56.3 NC_004680.1 + 747 0.66 0.718178
Target:  5'- uGGGCACCguUUggcuGGCCGUcGGCgGUUCg -3'
miRNA:   3'- -CCUGUGGguAGu---UUGGCA-CCGgCGGG- -5'
18082 3' -56.3 NC_004680.1 + 851 0.67 0.654416
Target:  5'- cGACgccaGCCCGcUCGAACCGccgacGGCCaGCCa -3'
miRNA:   3'- cCUG----UGGGU-AGUUUGGCa----CCGG-CGGg -5'
18082 3' -56.3 NC_004680.1 + 3536 0.73 0.340645
Target:  5'- aGACGCCCA-CGAcUCGccGGCCGCCUu -3'
miRNA:   3'- cCUGUGGGUaGUUuGGCa-CCGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 3816 0.66 0.707694
Target:  5'- uGGCAgCCAUCGAcUCuugGGCCGCUUg -3'
miRNA:   3'- cCUGUgGGUAGUUuGGca-CCGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 4214 0.66 0.718178
Target:  5'- cGGACAUCg--CAGACCGcGGCggaCGCgCCg -3'
miRNA:   3'- -CCUGUGGguaGUUUGGCaCCG---GCG-GG- -5'
18082 3' -56.3 NC_004680.1 + 5080 0.67 0.654416
Target:  5'- cGGACAUgCuccUgGAGgaGUGGaCCGCCCa -3'
miRNA:   3'- -CCUGUGgGu--AgUUUggCACC-GGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 5191 0.66 0.675856
Target:  5'- uGGCACCUaccGUCAAggacuacaagGCCGcUGGCCGgCa -3'
miRNA:   3'- cCUGUGGG---UAGUU----------UGGC-ACCGGCgGg -5'
18082 3' -56.3 NC_004680.1 + 5441 0.7 0.475885
Target:  5'- cGGugGCCa---GGGCCGUGGCa-CCCg -3'
miRNA:   3'- -CCugUGGguagUUUGGCACCGgcGGG- -5'
18082 3' -56.3 NC_004680.1 + 5712 0.68 0.589921
Target:  5'- -aGCACCCAgCAGGuucCCGaUGGugcCCGCCCg -3'
miRNA:   3'- ccUGUGGGUaGUUU---GGC-ACC---GGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 6040 0.71 0.409254
Target:  5'- cGGGCGCagguCGUCAAugggcGCgUGUGGCUGCCUg -3'
miRNA:   3'- -CCUGUGg---GUAGUU-----UG-GCACCGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 7653 0.68 0.611375
Target:  5'- uGACAUUCA-CAAGCCGUucaucgagcguGGCgGCCUg -3'
miRNA:   3'- cCUGUGGGUaGUUUGGCA-----------CCGgCGGG- -5'
18082 3' -56.3 NC_004680.1 + 8799 0.73 0.332677
Target:  5'- cGGAgACCCGUCccGGCgCGgucaaggGGCCGCCg -3'
miRNA:   3'- -CCUgUGGGUAGu-UUG-GCa------CCGGCGGg -5'
18082 3' -56.3 NC_004680.1 + 10003 0.66 0.726508
Target:  5'- aGGGgACCgGUCGGGCCGgcaucgacgucGCUGCCg -3'
miRNA:   3'- -CCUgUGGgUAGUUUGGCac---------CGGCGGg -5'
18082 3' -56.3 NC_004680.1 + 10270 0.66 0.728582
Target:  5'- gGGGCAuCCCGUUG--UCGUGGCUGgCg -3'
miRNA:   3'- -CCUGU-GGGUAGUuuGGCACCGGCgGg -5'
18082 3' -56.3 NC_004680.1 + 11011 0.68 0.589921
Target:  5'- cGGCcucCCCAUCGGGCCagccGGCCcCCCg -3'
miRNA:   3'- cCUGu--GGGUAGUUUGGca--CCGGcGGG- -5'
18082 3' -56.3 NC_004680.1 + 11104 0.74 0.287761
Target:  5'- cGGCGCCCAagCAGaacGCCGcGGCCGUUCg -3'
miRNA:   3'- cCUGUGGGUa-GUU---UGGCaCCGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 11135 0.67 0.647965
Target:  5'- aGGAUGCCaucgacggcgggagaCAUCGAcgggGCCGgggGGCCggcugGCCCg -3'
miRNA:   3'- -CCUGUGG---------------GUAGUU----UGGCa--CCGG-----CGGG- -5'
18082 3' -56.3 NC_004680.1 + 11171 0.72 0.348751
Target:  5'- uGGGCGCCgG---GGCCGccaccaaGGCCGCCCg -3'
miRNA:   3'- -CCUGUGGgUaguUUGGCa------CCGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 11316 0.69 0.503
Target:  5'- uGGAUGCCCGccaCAAACUGgcgGagaagcgugcccgcGCCGCCCa -3'
miRNA:   3'- -CCUGUGGGUa--GUUUGGCa--C--------------CGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 11761 1.14 0.000469
Target:  5'- aGGACACCCAUCAAACCGUGGCCGCCCu -3'
miRNA:   3'- -CCUGUGGGUAGUUUGGCACCGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.