miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18082 3' -56.3 NC_004680.1 + 44118 0.68 0.600635
Target:  5'- uGAgGCCCG-CGAACUGgcuGCCGCUCu -3'
miRNA:   3'- cCUgUGGGUaGUUUGGCac-CGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 23436 0.69 0.495904
Target:  5'- cGGcACGCUgAUCGuGCa--GGCCGCCCg -3'
miRNA:   3'- -CC-UGUGGgUAGUuUGgcaCCGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 11316 0.69 0.503
Target:  5'- uGGAUGCCCGccaCAAACUGgcgGagaagcgugcccgcGCCGCCCa -3'
miRNA:   3'- -CCUGUGGGUa--GUUUGGCa--C--------------CGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 19078 0.69 0.547483
Target:  5'- cGGCACgCAUUAuGugCGUGGCCGUg- -3'
miRNA:   3'- cCUGUGgGUAGU-UugGCACCGGCGgg -5'
18082 3' -56.3 NC_004680.1 + 37962 0.69 0.547483
Target:  5'- cGGGCGgCCAUCGAACgGgcucgGGCgcuaGCCg -3'
miRNA:   3'- -CCUGUgGGUAGUUUGgCa----CCGg---CGGg -5'
18082 3' -56.3 NC_004680.1 + 15536 0.68 0.556959
Target:  5'- uGGugGCCCG-CAcagugcggauggaAACCGUucaGGCCGUCa -3'
miRNA:   3'- -CCugUGGGUaGU-------------UUGGCA---CCGGCGGg -5'
18082 3' -56.3 NC_004680.1 + 25319 0.68 0.567542
Target:  5'- uGGACAgUCAUCGccUCGUagacgagGGCCGCCa -3'
miRNA:   3'- -CCUGUgGGUAGUuuGGCA-------CCGGCGGg -5'
18082 3' -56.3 NC_004680.1 + 11011 0.68 0.589921
Target:  5'- cGGCcucCCCAUCGGGCCagccGGCCcCCCg -3'
miRNA:   3'- cCUGu--GGGUAGUUUGGca--CCGGcGGG- -5'
18082 3' -56.3 NC_004680.1 + 20748 0.68 0.589921
Target:  5'- uGGcCGCCgAUCGGGCCuGUuccGCCGCCa -3'
miRNA:   3'- -CCuGUGGgUAGUUUGG-CAc--CGGCGGg -5'
18082 3' -56.3 NC_004680.1 + 28196 0.7 0.485846
Target:  5'- uGGACACCCGgcccgugcugaUC--ACCGUGuGCgGCaCCg -3'
miRNA:   3'- -CCUGUGGGU-----------AGuuUGGCAC-CGgCG-GG- -5'
18082 3' -56.3 NC_004680.1 + 12143 0.7 0.485846
Target:  5'- cGGGCAa-CAUCAAcCCGUccggcgcuGCCGCCCa -3'
miRNA:   3'- -CCUGUggGUAGUUuGGCAc-------CGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 57625 0.7 0.456277
Target:  5'- gGGaACACCgAcUCGAACCcgcaGCCGCCCa -3'
miRNA:   3'- -CC-UGUGGgU-AGUUUGGcac-CGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 11104 0.74 0.287761
Target:  5'- cGGCGCCCAagCAGaacGCCGcGGCCGUUCg -3'
miRNA:   3'- cCUGUGGGUa-GUU---UGGCaCCGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 8799 0.73 0.332677
Target:  5'- cGGAgACCCGUCccGGCgCGgucaaggGGCCGCCg -3'
miRNA:   3'- -CCUgUGGGUAGu-UUG-GCa------CCGGCGGg -5'
18082 3' -56.3 NC_004680.1 + 35876 0.72 0.365371
Target:  5'- aGGAagGCCgAUCGGACgCGaaGCCGCCCa -3'
miRNA:   3'- -CCUg-UGGgUAGUUUG-GCacCGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 53876 0.72 0.38253
Target:  5'- gGGcuGCACCUGccUCGGuGCCGcacaucUGGCCGCCCg -3'
miRNA:   3'- -CC--UGUGGGU--AGUU-UGGC------ACCGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 12869 0.71 0.400217
Target:  5'- aGGACaucgACCCG-CAAGCC---GCCGCCCa -3'
miRNA:   3'- -CCUG----UGGGUaGUUUGGcacCGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 6040 0.71 0.409254
Target:  5'- cGGGCGCagguCGUCAAugggcGCgUGUGGCUGCCUg -3'
miRNA:   3'- -CCUGUGg---GUAGUU-----UG-GCACCGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 39276 0.71 0.418417
Target:  5'- cGACuACCCGgaaugcUCAGcacGCCcacUGGCCGCCCu -3'
miRNA:   3'- cCUG-UGGGU------AGUU---UGGc--ACCGGCGGG- -5'
18082 3' -56.3 NC_004680.1 + 26692 0.7 0.446637
Target:  5'- -cGCACCCG-CGAACa--GGUCGCCCg -3'
miRNA:   3'- ccUGUGGGUaGUUUGgcaCCGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.