miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18085 5' -64 NC_004680.1 + 12546 1.09 0.000148
Target:  5'- gUGGCGCACCGGCAGCCAUCGGGCCGCc -3'
miRNA:   3'- -ACCGCGUGGCCGUCGGUAGCCCGGCG- -5'
18085 5' -64 NC_004680.1 + 26182 0.75 0.066962
Target:  5'- gUGGCGUuccaGCCGGCggGGCCG-CGGGaCUGCa -3'
miRNA:   3'- -ACCGCG----UGGCCG--UCGGUaGCCC-GGCG- -5'
18085 5' -64 NC_004680.1 + 27089 0.75 0.07671
Target:  5'- cGGCGCGCCuGUAGUCGUCGGagaGUCGUu -3'
miRNA:   3'- aCCGCGUGGcCGUCGGUAGCC---CGGCG- -5'
18085 5' -64 NC_004680.1 + 21372 0.74 0.090206
Target:  5'- aUGGCgGCGCCGGCGGUguacuucUCGGGuCCGUu -3'
miRNA:   3'- -ACCG-CGUGGCCGUCGgu-----AGCCC-GGCG- -5'
18085 5' -64 NC_004680.1 + 9225 0.73 0.095187
Target:  5'- aUGGCGCGgUGGCGcguGCUGUUcgcggGGGCCGCu -3'
miRNA:   3'- -ACCGCGUgGCCGU---CGGUAG-----CCCGGCG- -5'
18085 5' -64 NC_004680.1 + 12719 0.73 0.100158
Target:  5'- cGGCcugaccaGCGCCGGguGCCAUCGcGuccagcgccauGCCGCc -3'
miRNA:   3'- aCCG-------CGUGGCCguCGGUAGC-C-----------CGGCG- -5'
18085 5' -64 NC_004680.1 + 58409 0.72 0.114739
Target:  5'- gUGGaguagGCGCCGGCaggugAGCCAgUGGGCUGUg -3'
miRNA:   3'- -ACCg----CGUGGCCG-----UCGGUaGCCCGGCG- -5'
18085 5' -64 NC_004680.1 + 13254 0.72 0.117821
Target:  5'- aGGUGCACCauuucuggugcGGCGGUCcgGUCGGGgaCCGCc -3'
miRNA:   3'- aCCGCGUGG-----------CCGUCGG--UAGCCC--GGCG- -5'
18085 5' -64 NC_004680.1 + 47845 0.72 0.117821
Target:  5'- cGGCugGCugCGGCGGUUGgcCGGGUCGCu -3'
miRNA:   3'- aCCG--CGugGCCGUCGGUa-GCCCGGCG- -5'
18085 5' -64 NC_004680.1 + 28386 0.72 0.117821
Target:  5'- aUGGUGCugCugGGUAGCCGaUGGGuuGCc -3'
miRNA:   3'- -ACCGCGugG--CCGUCGGUaGCCCggCG- -5'
18085 5' -64 NC_004680.1 + 36007 0.71 0.13763
Target:  5'- -uGCGCcCCGGCGGCCAgauucgaucgCGGacaagguGCCGCg -3'
miRNA:   3'- acCGCGuGGCCGUCGGUa---------GCC-------CGGCG- -5'
18085 5' -64 NC_004680.1 + 9848 0.71 0.137991
Target:  5'- cUGGCGCggugGCUGGCcGCgCGUUGGGuaCCGCu -3'
miRNA:   3'- -ACCGCG----UGGCCGuCG-GUAGCCC--GGCG- -5'
18085 5' -64 NC_004680.1 + 56761 0.71 0.141647
Target:  5'- uUGGCGUACUGGCgGGCCAcugauguggCGGGgacgUCGCa -3'
miRNA:   3'- -ACCGCGUGGCCG-UCGGUa--------GCCC----GGCG- -5'
18085 5' -64 NC_004680.1 + 8796 0.71 0.145391
Target:  5'- cGGCGgAgacccgucCCGGCgcGGUCAagGGGCCGCc -3'
miRNA:   3'- aCCGCgU--------GGCCG--UCGGUagCCCGGCG- -5'
18085 5' -64 NC_004680.1 + 11289 0.71 0.149225
Target:  5'- cGGUGCAuCCGGCAaCU-UCGGGCCa- -3'
miRNA:   3'- aCCGCGU-GGCCGUcGGuAGCCCGGcg -5'
18085 5' -64 NC_004680.1 + 3846 0.7 0.15157
Target:  5'- gGGUGacuucugcgauguaCACCgaagucauGGCAGCCAUCgacucuuGGGCCGCu -3'
miRNA:   3'- aCCGC--------------GUGG--------CCGUCGGUAG-------CCCGGCG- -5'
18085 5' -64 NC_004680.1 + 37817 0.7 0.157171
Target:  5'- uUGaGCGUGCCaaGGCcgauauggAGCUGUgGGGCCGCa -3'
miRNA:   3'- -AC-CGCGUGG--CCG--------UCGGUAgCCCGGCG- -5'
18085 5' -64 NC_004680.1 + 43640 0.7 0.157171
Target:  5'- cGGaGCAgCGGCAGCguUCccGGCCGCc -3'
miRNA:   3'- aCCgCGUgGCCGUCGguAGc-CCGGCG- -5'
18085 5' -64 NC_004680.1 + 10993 0.7 0.157171
Target:  5'- cGGCaGCgacccugauACCGGCcuccCCAUCGGGCCaGCc -3'
miRNA:   3'- aCCG-CG---------UGGCCGuc--GGUAGCCCGG-CG- -5'
18085 5' -64 NC_004680.1 + 59372 0.7 0.16087
Target:  5'- gGGCacguuuuGgGCCGcCAGCUAacuuUCGGGCCGCg -3'
miRNA:   3'- aCCG-------CgUGGCcGUCGGU----AGCCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.