miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18085 5' -64 NC_004680.1 + 13454 0.68 0.240795
Target:  5'- aGGCGCACCGcaaGCA-CCGuuggagaUCGGGaaGCg -3'
miRNA:   3'- aCCGCGUGGC---CGUcGGU-------AGCCCggCG- -5'
18085 5' -64 NC_004680.1 + 37951 0.69 0.197828
Target:  5'- uUGaGCGUcuGCgGGCGGCCAUCgaacGGGCUcggGCg -3'
miRNA:   3'- -AC-CGCG--UGgCCGUCGGUAG----CCCGG---CG- -5'
18085 5' -64 NC_004680.1 + 11703 0.69 0.197828
Target:  5'- uUGGCGCGCagGGC-GUguUCGGcCCGCa -3'
miRNA:   3'- -ACCGCGUGg-CCGuCGguAGCCcGGCG- -5'
18085 5' -64 NC_004680.1 + 27930 0.69 0.197828
Target:  5'- -uGCGCAUCGaCGGCCAuauguuggucUUGGGCCGg -3'
miRNA:   3'- acCGCGUGGCcGUCGGU----------AGCCCGGCg -5'
18085 5' -64 NC_004680.1 + 30934 0.68 0.212767
Target:  5'- gUGGCGUcggugugGCUGGCGGUCGUCGcGGggaugaucgUCGCa -3'
miRNA:   3'- -ACCGCG-------UGGCCGUCGGUAGC-CC---------GGCG- -5'
18085 5' -64 NC_004680.1 + 39993 0.68 0.213299
Target:  5'- cUGGCGCGgaucuaCGGCugacGCag-CGGGCCGUc -3'
miRNA:   3'- -ACCGCGUg-----GCCGu---CGguaGCCCGGCG- -5'
18085 5' -64 NC_004680.1 + 9578 0.68 0.224181
Target:  5'- gUGGCGguUCGGCuGCU----GGCCGCg -3'
miRNA:   3'- -ACCGCguGGCCGuCGGuagcCCGGCG- -5'
18085 5' -64 NC_004680.1 + 18110 0.68 0.229797
Target:  5'- gUGG-GUACCGGCGcGCCgAUCcGGuuGCa -3'
miRNA:   3'- -ACCgCGUGGCCGU-CGG-UAGcCCggCG- -5'
18085 5' -64 NC_004680.1 + 12622 0.68 0.230366
Target:  5'- aUGGCGCuggacgcgauggcacCCGGCGcUgGUCaGGCCGCg -3'
miRNA:   3'- -ACCGCGu--------------GGCCGUcGgUAGcCCGGCG- -5'
18085 5' -64 NC_004680.1 + 50125 0.69 0.19733
Target:  5'- aGGCuGCGCUGGCcgacuacgaaguGGCgAaggggucUCGGGUCGCg -3'
miRNA:   3'- aCCG-CGUGGCCG------------UCGgU-------AGCCCGGCG- -5'
18085 5' -64 NC_004680.1 + 1846 0.69 0.183345
Target:  5'- gGGCGgGCCGGUucCCGgaUCGGGuuGUg -3'
miRNA:   3'- aCCGCgUGGCCGucGGU--AGCCCggCG- -5'
18085 5' -64 NC_004680.1 + 25043 0.7 0.17873
Target:  5'- gGGCagGCAggucCCGGUGGCgGUgGGGCCGg -3'
miRNA:   3'- aCCG--CGU----GGCCGUCGgUAgCCCGGCg -5'
18085 5' -64 NC_004680.1 + 9225 0.73 0.095187
Target:  5'- aUGGCGCGgUGGCGcguGCUGUUcgcggGGGCCGCu -3'
miRNA:   3'- -ACCGCGUgGCCGU---CGGUAG-----CCCGGCG- -5'
18085 5' -64 NC_004680.1 + 47845 0.72 0.117821
Target:  5'- cGGCugGCugCGGCGGUUGgcCGGGUCGCu -3'
miRNA:   3'- aCCG--CGugGCCGUCGGUa-GCCCGGCG- -5'
18085 5' -64 NC_004680.1 + 9848 0.71 0.137991
Target:  5'- cUGGCGCggugGCUGGCcGCgCGUUGGGuaCCGCu -3'
miRNA:   3'- -ACCGCG----UGGCCGuCG-GUAGCCC--GGCG- -5'
18085 5' -64 NC_004680.1 + 8796 0.71 0.145391
Target:  5'- cGGCGgAgacccgucCCGGCgcGGUCAagGGGCCGCc -3'
miRNA:   3'- aCCGCgU--------GGCCG--UCGGUagCCCGGCG- -5'
18085 5' -64 NC_004680.1 + 37817 0.7 0.157171
Target:  5'- uUGaGCGUGCCaaGGCcgauauggAGCUGUgGGGCCGCa -3'
miRNA:   3'- -AC-CGCGUGG--CCG--------UCGGUAgCCCGGCG- -5'
18085 5' -64 NC_004680.1 + 10993 0.7 0.157171
Target:  5'- cGGCaGCgacccugauACCGGCcuccCCAUCGGGCCaGCc -3'
miRNA:   3'- aCCG-CG---------UGGCCGuc--GGUAGCCCGG-CG- -5'
18085 5' -64 NC_004680.1 + 23223 0.7 0.174218
Target:  5'- gGGCgGCAuCUGGuCGGCCAgcucgUCGGGCaCGUu -3'
miRNA:   3'- aCCG-CGU-GGCC-GUCGGU-----AGCCCG-GCG- -5'
18085 5' -64 NC_004680.1 + 13419 0.7 0.17873
Target:  5'- aUGGgGCACUGGUGGgCAcCGGuCCGCu -3'
miRNA:   3'- -ACCgCGUGGCCGUCgGUaGCCcGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.