miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18085 5' -64 NC_004680.1 + 238 0.66 0.31396
Target:  5'- cGGUGCGCUGGUGGaaugaCAUUuGGGCguCGCc -3'
miRNA:   3'- aCCGCGUGGCCGUCg----GUAG-CCCG--GCG- -5'
18085 5' -64 NC_004680.1 + 1846 0.69 0.183345
Target:  5'- gGGCGgGCCGGUucCCGgaUCGGGuuGUg -3'
miRNA:   3'- aCCGCgUGGCCGucGGU--AGCCCggCG- -5'
18085 5' -64 NC_004680.1 + 3290 0.68 0.229797
Target:  5'- cGGCaucaGCAUCGGCAGCggaGUCuuGGUCGCc -3'
miRNA:   3'- aCCG----CGUGGCCGUCGg--UAGc-CCGGCG- -5'
18085 5' -64 NC_004680.1 + 3714 0.66 0.32132
Target:  5'- cGGUgGCACCGGUuguccaagcGGCCcaagaGUCGauGGCUGCc -3'
miRNA:   3'- aCCG-CGUGGCCG---------UCGG-----UAGC--CCGGCG- -5'
18085 5' -64 NC_004680.1 + 3846 0.7 0.15157
Target:  5'- gGGUGacuucugcgauguaCACCgaagucauGGCAGCCAUCgacucuuGGGCCGCu -3'
miRNA:   3'- aCCGC--------------GUGG--------CCGUCGGUAG-------CCCGGCG- -5'
18085 5' -64 NC_004680.1 + 5017 0.67 0.253457
Target:  5'- cGGCaGCGCCGcauacuCAGCCGgugugagaggcuUCGGGCCu- -3'
miRNA:   3'- aCCG-CGUGGCc-----GUCGGU------------AGCCCGGcg -5'
18085 5' -64 NC_004680.1 + 5215 0.66 0.32132
Target:  5'- aGGcCGCugGCCGGCAGaCC-UCGGcGgaCGCg -3'
miRNA:   3'- aCC-GCG--UGGCCGUC-GGuAGCC-Cg-GCG- -5'
18085 5' -64 NC_004680.1 + 5447 0.68 0.229797
Target:  5'- cGGUGU--CGGUGGCCA--GGGCCGUg -3'
miRNA:   3'- aCCGCGugGCCGUCGGUagCCCGGCG- -5'
18085 5' -64 NC_004680.1 + 6007 0.66 0.306729
Target:  5'- gGGCGgguguucacCACCGG-GGCCAcUCGGGUgcgggCGCa -3'
miRNA:   3'- aCCGC---------GUGGCCgUCGGU-AGCCCG-----GCG- -5'
18085 5' -64 NC_004680.1 + 7442 0.66 0.292651
Target:  5'- cGGC-CACUugGuGCGGCaugUGGGCCGCu -3'
miRNA:   3'- aCCGcGUGG--C-CGUCGguaGCCCGGCG- -5'
18085 5' -64 NC_004680.1 + 8402 0.66 0.292651
Target:  5'- gGGCG-AUCGuucCcGCCggGUCGGGCCGCa -3'
miRNA:   3'- aCCGCgUGGCc--GuCGG--UAGCCCGGCG- -5'
18085 5' -64 NC_004680.1 + 8796 0.71 0.145391
Target:  5'- cGGCGgAgacccgucCCGGCgcGGUCAagGGGCCGCc -3'
miRNA:   3'- aCCGCgU--------GGCCG--UCGGUagCCCGGCG- -5'
18085 5' -64 NC_004680.1 + 9225 0.73 0.095187
Target:  5'- aUGGCGCGgUGGCGcguGCUGUUcgcggGGGCCGCu -3'
miRNA:   3'- -ACCGCGUgGCCGU---CGGUAG-----CCCGGCG- -5'
18085 5' -64 NC_004680.1 + 9578 0.68 0.224181
Target:  5'- gUGGCGguUCGGCuGCU----GGCCGCg -3'
miRNA:   3'- -ACCGCguGGCCGuCGGuagcCCGGCG- -5'
18085 5' -64 NC_004680.1 + 9848 0.71 0.137991
Target:  5'- cUGGCGCggugGCUGGCcGCgCGUUGGGuaCCGCu -3'
miRNA:   3'- -ACCGCG----UGGCCGuCG-GUAGCCC--GGCG- -5'
18085 5' -64 NC_004680.1 + 10993 0.7 0.157171
Target:  5'- cGGCaGCgacccugauACCGGCcuccCCAUCGGGCCaGCc -3'
miRNA:   3'- aCCG-CG---------UGGCCGuc--GGUAGCCCGG-CG- -5'
18085 5' -64 NC_004680.1 + 10994 0.67 0.253457
Target:  5'- aGGCGguCCuc--GCCGUCGGGCUGg -3'
miRNA:   3'- aCCGCguGGccguCGGUAGCCCGGCg -5'
18085 5' -64 NC_004680.1 + 11100 0.68 0.2281
Target:  5'- cGGgGgGCCGGCuggcccgauggggaGGCCGguaucaGGGUCGCu -3'
miRNA:   3'- aCCgCgUGGCCG--------------UCGGUag----CCCGGCG- -5'
18085 5' -64 NC_004680.1 + 11183 0.66 0.299626
Target:  5'- cGGCGUucuGCUugGGC-GCCG--GGGCCGCc -3'
miRNA:   3'- aCCGCG---UGG--CCGuCGGUagCCCGGCG- -5'
18085 5' -64 NC_004680.1 + 11253 0.68 0.241386
Target:  5'- cGaCGCGCCaggaGGCGGCagaAUCGGGucacCCGCa -3'
miRNA:   3'- aCcGCGUGG----CCGUCGg--UAGCCC----GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.