Results 1 - 20 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18104 | 3' | -58.3 | NC_004680.1 | + | 21399 | 1.1 | 0.000527 |
Target: 5'- cCACGCCACCACCGCGAACACCGUGGCc -3' miRNA: 3'- -GUGCGGUGGUGGCGCUUGUGGCACCG- -5' |
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18104 | 3' | -58.3 | NC_004680.1 | + | 19396 | 0.75 | 0.163456 |
Target: 5'- uCAC-CCAguucggCACCGgGAACACCGUGGCc -3' miRNA: 3'- -GUGcGGUg-----GUGGCgCUUGUGGCACCG- -5' |
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18104 | 3' | -58.3 | NC_004680.1 | + | 18521 | 0.74 | 0.196372 |
Target: 5'- gCACGCCGCCGCggauaGCGGACaccACCGUGuCa -3' miRNA: 3'- -GUGCGGUGGUGg----CGCUUG---UGGCACcG- -5' |
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18104 | 3' | -58.3 | NC_004680.1 | + | 25446 | 0.73 | 0.229058 |
Target: 5'- aCGCGCCgcgACUACCGcCGAgcuugACGCCGaacUGGCg -3' miRNA: 3'- -GUGCGG---UGGUGGC-GCU-----UGUGGC---ACCG- -5' |
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18104 | 3' | -58.3 | NC_004680.1 | + | 12520 | 0.73 | 0.229058 |
Target: 5'- -cCGCCACCACCggugGUGGGCAgCGgGGCu -3' miRNA: 3'- guGCGGUGGUGG----CGCUUGUgGCaCCG- -5' |
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18104 | 3' | -58.3 | NC_004680.1 | + | 25839 | 0.72 | 0.293619 |
Target: 5'- -cCGCCACCACgGCGAGaccacggaGCCcUGGUg -3' miRNA: 3'- guGCGGUGGUGgCGCUUg-------UGGcACCG- -5' |
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18104 | 3' | -58.3 | NC_004680.1 | + | 24621 | 0.72 | 0.279654 |
Target: 5'- gGCGCCGCCACCGCcacCACCGc--- -3' miRNA: 3'- gUGCGGUGGUGGCGcuuGUGGCaccg -5' |
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18104 | 3' | -58.3 | NC_004680.1 | + | 12309 | 0.71 | 0.300078 |
Target: 5'- cCACGCCACCggaACCGCucgcgggGAACGCUGccgcggacggGGCg -3' miRNA: 3'- -GUGCGGUGG---UGGCG-------CUUGUGGCa---------CCG- -5' |
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18104 | 3' | -58.3 | NC_004680.1 | + | 33864 | 0.71 | 0.322399 |
Target: 5'- uGCGCCGgcaggucCCACCG-GGACugCG-GGCa -3' miRNA: 3'- gUGCGGU-------GGUGGCgCUUGugGCaCCG- -5' |
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18104 | 3' | -58.3 | NC_004680.1 | + | 27282 | 0.71 | 0.338748 |
Target: 5'- gACGCUGCCGCCGaGAACcucGCCaaGUGGUu -3' miRNA: 3'- gUGCGGUGGUGGCgCUUG---UGG--CACCG- -5' |
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18104 | 3' | -58.3 | NC_004680.1 | + | 24980 | 0.71 | 0.315575 |
Target: 5'- -cCGCCACCACCGCcGGcgGCACCGc--- -3' miRNA: 3'- guGCGGUGGUGGCG-CU--UGUGGCaccg -5' |
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18104 | 3' | -58.3 | NC_004680.1 | + | 19433 | 0.71 | 0.300802 |
Target: 5'- aACGCCACCACaUGgGuGCGCgGUGaGCa -3' miRNA: 3'- gUGCGGUGGUG-GCgCuUGUGgCAC-CG- -5' |
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18104 | 3' | -58.3 | NC_004680.1 | + | 45181 | 0.71 | 0.308121 |
Target: 5'- gGCgGCUcUCGCCGCGAcgACACCaacGUGGCg -3' miRNA: 3'- gUG-CGGuGGUGGCGCU--UGUGG---CACCG- -5' |
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18104 | 3' | -58.3 | NC_004680.1 | + | 58444 | 0.71 | 0.330888 |
Target: 5'- gCACGCCACCAaggccacaccaUCGCcuACACC-UGGCc -3' miRNA: 3'- -GUGCGGUGGU-----------GGCGcuUGUGGcACCG- -5' |
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18104 | 3' | -58.3 | NC_004680.1 | + | 19821 | 0.7 | 0.37748 |
Target: 5'- aCGCGCCcuuACCGCCGUuacccgcuccaccaGGuggcgUACCGUGGCc -3' miRNA: 3'- -GUGCGG---UGGUGGCG--------------CUu----GUGGCACCG- -5' |
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18104 | 3' | -58.3 | NC_004680.1 | + | 14712 | 0.7 | 0.35487 |
Target: 5'- uGCGCCGCUACC-CGAuguaGCCccuggaGUGGCa -3' miRNA: 3'- gUGCGGUGGUGGcGCUug--UGG------CACCG- -5' |
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18104 | 3' | -58.3 | NC_004680.1 | + | 39721 | 0.7 | 0.380052 |
Target: 5'- aGCGCCGCagagagCGCCGCaggGAGCGCCGcaUGGa -3' miRNA: 3'- gUGCGGUG------GUGGCG---CUUGUGGC--ACCg -5' |
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18104 | 3' | -58.3 | NC_004680.1 | + | 39685 | 0.7 | 0.380052 |
Target: 5'- aGCGCCGCagggagCGCCGCaugGAGCGCCGcaUGGa -3' miRNA: 3'- gUGCGGUG------GUGGCG---CUUGUGGC--ACCg -5' |
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18104 | 3' | -58.3 | NC_004680.1 | + | 39649 | 0.7 | 0.380052 |
Target: 5'- aGCGCCGCagggagCGCCGCaggGAGCGCCGcaUGGa -3' miRNA: 3'- gUGCGGUG------GUGGCG---CUUGUGGC--ACCg -5' |
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18104 | 3' | -58.3 | NC_004680.1 | + | 39577 | 0.7 | 0.380052 |
Target: 5'- aGCGCCGCauggagCGCCGCaggGAGCGCCGcaUGGa -3' miRNA: 3'- gUGCGGUG------GUGGCG---CUUGUGGC--ACCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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