miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18104 3' -58.3 NC_004680.1 + 28716 0.7 0.371526
Target:  5'- uCGCGCCACCACgGCGGgguuucacgcAUGCCGUu-- -3'
miRNA:   3'- -GUGCGGUGGUGgCGCU----------UGUGGCAccg -5'
18104 3' -58.3 NC_004680.1 + 19821 0.7 0.37748
Target:  5'- aCGCGCCcuuACCGCCGUuacccgcuccaccaGGuggcgUACCGUGGCc -3'
miRNA:   3'- -GUGCGG---UGGUGGCG--------------CUu----GUGGCACCG- -5'
18104 3' -58.3 NC_004680.1 + 25645 0.7 0.379193
Target:  5'- gACGCCGCacccaaaCACUGCGAcaaccacgGCACCGgcaccGGCc -3'
miRNA:   3'- gUGCGGUG-------GUGGCGCU--------UGUGGCa----CCG- -5'
18104 3' -58.3 NC_004680.1 + 11778 0.7 0.380052
Target:  5'- aCACGCCcuGCgCGCCaaGGACacccaucaaACCGUGGCc -3'
miRNA:   3'- -GUGCGG--UG-GUGGcgCUUG---------UGGCACCG- -5'
18104 3' -58.3 NC_004680.1 + 39685 0.7 0.380052
Target:  5'- aGCGCCGCagggagCGCCGCaugGAGCGCCGcaUGGa -3'
miRNA:   3'- gUGCGGUG------GUGGCG---CUUGUGGC--ACCg -5'
18104 3' -58.3 NC_004680.1 + 39721 0.7 0.380052
Target:  5'- aGCGCCGCagagagCGCCGCaggGAGCGCCGcaUGGa -3'
miRNA:   3'- gUGCGGUG------GUGGCG---CUUGUGGC--ACCg -5'
18104 3' -58.3 NC_004680.1 + 39853 0.7 0.380052
Target:  5'- aGCGCCGCagggagCGCCGCagaGAGCGCCGcaUGGa -3'
miRNA:   3'- gUGCGGUG------GUGGCG---CUUGUGGC--ACCg -5'
18104 3' -58.3 NC_004680.1 + 39649 0.7 0.380052
Target:  5'- aGCGCCGCagggagCGCCGCaggGAGCGCCGcaUGGa -3'
miRNA:   3'- gUGCGGUG------GUGGCG---CUUGUGGC--ACCg -5'
18104 3' -58.3 NC_004680.1 + 39577 0.7 0.380052
Target:  5'- aGCGCCGCauggagCGCCGCaggGAGCGCCGcaUGGa -3'
miRNA:   3'- gUGCGGUG------GUGGCG---CUUGUGGC--ACCg -5'
18104 3' -58.3 NC_004680.1 + 39757 0.7 0.380052
Target:  5'- aGCGCCGCauggagCGCCGCaggGAGCGCCGcaUGGa -3'
miRNA:   3'- gUGCGGUG------GUGGCG---CUUGUGGC--ACCg -5'
18104 3' -58.3 NC_004680.1 + 58711 0.69 0.388707
Target:  5'- uGCGCagCAUCAUCGCGAaggaauGCGCCGauaGGCa -3'
miRNA:   3'- gUGCG--GUGGUGGCGCU------UGUGGCa--CCG- -5'
18104 3' -58.3 NC_004680.1 + 45152 0.69 0.388707
Target:  5'- -cUGCaCACCAUCGCaGGCcCCGUGGUc -3'
miRNA:   3'- guGCG-GUGGUGGCGcUUGuGGCACCG- -5'
18104 3' -58.3 NC_004680.1 + 22713 0.69 0.388707
Target:  5'- aACGCCACCGCCacCGGA-ACCGUgcaaaaGGCu -3'
miRNA:   3'- gUGCGGUGGUGGc-GCUUgUGGCA------CCG- -5'
18104 3' -58.3 NC_004680.1 + 35907 0.69 0.388707
Target:  5'- cCGCGgCACCuuguCCGCGAucaaucuggcCGCCGgGGCg -3'
miRNA:   3'- -GUGCgGUGGu---GGCGCUu---------GUGGCaCCG- -5'
18104 3' -58.3 NC_004680.1 + 7681 0.69 0.397491
Target:  5'- gGCgGCCugCAggcgguguucauCCGCGAcaACCGUGGUg -3'
miRNA:   3'- gUG-CGGugGU------------GGCGCUugUGGCACCG- -5'
18104 3' -58.3 NC_004680.1 + 36593 0.69 0.397491
Target:  5'- gACGCC-CCGCUgguuGCGAAgGCUGaGGCg -3'
miRNA:   3'- gUGCGGuGGUGG----CGCUUgUGGCaCCG- -5'
18104 3' -58.3 NC_004680.1 + 55794 0.69 0.397491
Target:  5'- -cCGCCACCcUCGCGAugGCCGg--- -3'
miRNA:   3'- guGCGGUGGuGGCGCUugUGGCaccg -5'
18104 3' -58.3 NC_004680.1 + 29901 0.69 0.397491
Target:  5'- uGCGCaCACCuuCgGCGAugcGCACC-UGGCg -3'
miRNA:   3'- gUGCG-GUGGu-GgCGCU---UGUGGcACCG- -5'
18104 3' -58.3 NC_004680.1 + 4300 0.69 0.405504
Target:  5'- gCGCGuCCGCCGcggucugcgauguCCGCGAACGCCuucaccUGGUc -3'
miRNA:   3'- -GUGC-GGUGGU-------------GGCGCUUGUGGc-----ACCG- -5'
18104 3' -58.3 NC_004680.1 + 51910 0.69 0.405504
Target:  5'- aGCGCagCACCgagagcauuggcuAUUGCGAACACCGcGGCc -3'
miRNA:   3'- gUGCG--GUGG-------------UGGCGCUUGUGGCaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.