miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18128 3' -46.1 NC_004680.1 + 35479 1.13 0.006065
Target:  5'- cAUAGAGAACAACGACGCAUCGAAACCg -3'
miRNA:   3'- -UAUCUCUUGUUGCUGCGUAGCUUUGG- -5'
18128 3' -46.1 NC_004680.1 + 27638 0.81 0.487643
Target:  5'- -gGGGGAACcACGAgCGguUCGAAGCCg -3'
miRNA:   3'- uaUCUCUUGuUGCU-GCguAGCUUUGG- -5'
18128 3' -46.1 NC_004680.1 + 26848 0.78 0.624284
Target:  5'- gGUGGAGAuggucaucaggGCAAUGACGguggcgaguuCAUCGAGGCCa -3'
miRNA:   3'- -UAUCUCU-----------UGUUGCUGC----------GUAGCUUUGG- -5'
18128 3' -46.1 NC_004680.1 + 50696 0.76 0.716928
Target:  5'- cUGGAGaAACGGCGACGauCAUCGAaucAACCc -3'
miRNA:   3'- uAUCUC-UUGUUGCUGC--GUAGCU---UUGG- -5'
18128 3' -46.1 NC_004680.1 + 35250 0.76 0.73941
Target:  5'- -aAGAGAACAccGCGcgaaGCGCGUCaAGACCa -3'
miRNA:   3'- uaUCUCUUGU--UGC----UGCGUAGcUUUGG- -5'
18128 3' -46.1 NC_004680.1 + 36678 0.74 0.823382
Target:  5'- cGUGGGGAACcaAGCaGgGCAUCGAGAUCa -3'
miRNA:   3'- -UAUCUCUUG--UUGcUgCGUAGCUUUGG- -5'
18128 3' -46.1 NC_004680.1 + 26191 0.74 0.83299
Target:  5'- -aAGAGGACggUGGCGUuccagccggCGggGCCg -3'
miRNA:   3'- uaUCUCUUGuuGCUGCGua-------GCuuUGG- -5'
18128 3' -46.1 NC_004680.1 + 15318 0.73 0.868941
Target:  5'- cGUGGAGAACAugGuCGCA--GAAugCg -3'
miRNA:   3'- -UAUCUCUUGUugCuGCGUagCUUugG- -5'
18128 3' -46.1 NC_004680.1 + 22603 0.73 0.877258
Target:  5'- cAUAGGuGACGgagGCGAuCGUAUCGGAACCc -3'
miRNA:   3'- -UAUCUcUUGU---UGCU-GCGUAGCUUUGG- -5'
18128 3' -46.1 NC_004680.1 + 19380 0.72 0.893031
Target:  5'- --cGGGAACAcCGugGCcgCGguGCCa -3'
miRNA:   3'- uauCUCUUGUuGCugCGuaGCuuUGG- -5'
18128 3' -46.1 NC_004680.1 + 35219 0.72 0.917095
Target:  5'- -aGGAGGGCGACcuaGACGCcgCGAccagugacacgacgcAGCCg -3'
miRNA:   3'- uaUCUCUUGUUG---CUGCGuaGCU---------------UUGG- -5'
18128 3' -46.1 NC_004680.1 + 58083 0.71 0.927186
Target:  5'- -----cGACAACGGCGCAcUCGGAugCg -3'
miRNA:   3'- uaucucUUGUUGCUGCGU-AGCUUugG- -5'
18128 3' -46.1 NC_004680.1 + 48661 0.71 0.933088
Target:  5'- -gGGAGGACAAgGuugcuCGCGUCG--GCCg -3'
miRNA:   3'- uaUCUCUUGUUgCu----GCGUAGCuuUGG- -5'
18128 3' -46.1 NC_004680.1 + 40862 0.71 0.933088
Target:  5'- --uGAGAGCAACGGCGgucauGUCGAuGACUg -3'
miRNA:   3'- uauCUCUUGUUGCUGCg----UAGCU-UUGG- -5'
18128 3' -46.1 NC_004680.1 + 30606 0.7 0.948937
Target:  5'- uUGGu--GCAGCGGCGCAUCGuguACg -3'
miRNA:   3'- uAUCucuUGUUGCUGCGUAGCuu-UGg -5'
18128 3' -46.1 NC_004680.1 + 7292 0.7 0.957561
Target:  5'- --cGGGAACAucACGAC-CAUCGAcacgacgAACCa -3'
miRNA:   3'- uauCUCUUGU--UGCUGcGUAGCU-------UUGG- -5'
18128 3' -46.1 NC_004680.1 + 26229 0.7 0.96207
Target:  5'- --cGAGuAGCGGgGGCG-AUCGGAACCg -3'
miRNA:   3'- uauCUC-UUGUUgCUGCgUAGCUUUGG- -5'
18128 3' -46.1 NC_004680.1 + 3042 0.7 0.96587
Target:  5'- --cGAGAACGGCaACGCgAUCGAcuacGCCu -3'
miRNA:   3'- uauCUCUUGUUGcUGCG-UAGCUu---UGG- -5'
18128 3' -46.1 NC_004680.1 + 57401 0.7 0.96587
Target:  5'- --cGuGGACGACGGcCGCAcUGGAACCc -3'
miRNA:   3'- uauCuCUUGUUGCU-GCGUaGCUUUGG- -5'
18128 3' -46.1 NC_004680.1 + 44336 0.69 0.969394
Target:  5'- uGUGGGGcuCAACGGCugGCAguUCGAcACCg -3'
miRNA:   3'- -UAUCUCuuGUUGCUG--CGU--AGCUuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.