miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18128 3' -46.1 NC_004680.1 + 985 0.66 0.996353
Target:  5'- -aGGAGAACGAaccgGACGCcccacCGGAuuGCCg -3'
miRNA:   3'- uaUCUCUUGUUg---CUGCGua---GCUU--UGG- -5'
18128 3' -46.1 NC_004680.1 + 1223 0.66 0.995578
Target:  5'- gAUGGAGGAucCGugGACGUuguacacGUCGAcggcugggcAGCCg -3'
miRNA:   3'- -UAUCUCUU--GUugCUGCG-------UAGCU---------UUGG- -5'
18128 3' -46.1 NC_004680.1 + 1413 0.69 0.97265
Target:  5'- -aAGaAGAACAACGACGgGUCcuGACg -3'
miRNA:   3'- uaUC-UCUUGUUGCUGCgUAGcuUUGg -5'
18128 3' -46.1 NC_004680.1 + 3042 0.7 0.96587
Target:  5'- --cGAGAACGGCaACGCgAUCGAcuacGCCu -3'
miRNA:   3'- uauCUCUUGUUGcUGCG-UAGCUu---UGG- -5'
18128 3' -46.1 NC_004680.1 + 4311 0.67 0.993926
Target:  5'- gGUAGu---CAACGGCGCGUCc--GCCg -3'
miRNA:   3'- -UAUCucuuGUUGCUGCGUAGcuuUGG- -5'
18128 3' -46.1 NC_004680.1 + 4463 0.68 0.988835
Target:  5'- -cGGAacACAGCGcCGUAaCGGAGCCa -3'
miRNA:   3'- uaUCUcuUGUUGCuGCGUaGCUUUGG- -5'
18128 3' -46.1 NC_004680.1 + 7234 0.69 0.969394
Target:  5'- -aAGAGGGCAGCGAuucggcuguCGUGUCGguGCa -3'
miRNA:   3'- uaUCUCUUGUUGCU---------GCGUAGCuuUGg -5'
18128 3' -46.1 NC_004680.1 + 7292 0.7 0.957561
Target:  5'- --cGGGAACAucACGAC-CAUCGAcacgacgAACCa -3'
miRNA:   3'- uauCUCUUGU--UGCUGcGUAGCU-------UUGG- -5'
18128 3' -46.1 NC_004680.1 + 11388 0.68 0.984057
Target:  5'- -aAGAGGACcggcucaaggcccguAACGAUGUgAUCGAAGCg -3'
miRNA:   3'- uaUCUCUUG---------------UUGCUGCG-UAGCUUUGg -5'
18128 3' -46.1 NC_004680.1 + 14055 0.67 0.992876
Target:  5'- -cGGAGccaccAGCAGCGG-GCGUUGAAACa -3'
miRNA:   3'- uaUCUC-----UUGUUGCUgCGUAGCUUUGg -5'
18128 3' -46.1 NC_004680.1 + 14783 0.67 0.994848
Target:  5'- ----cGggUAGCGGCGCAaCGGAGuCCc -3'
miRNA:   3'- uaucuCuuGUUGCUGCGUaGCUUU-GG- -5'
18128 3' -46.1 NC_004680.1 + 15318 0.73 0.868941
Target:  5'- cGUGGAGAACAugGuCGCA--GAAugCg -3'
miRNA:   3'- -UAUCUCUUGUugCuGCGUagCUUugG- -5'
18128 3' -46.1 NC_004680.1 + 19380 0.72 0.893031
Target:  5'- --cGGGAACAcCGugGCcgCGguGCCa -3'
miRNA:   3'- uauCUCUUGUuGCugCGuaGCuuUGG- -5'
18128 3' -46.1 NC_004680.1 + 19622 0.69 0.975649
Target:  5'- uGUGGAGAuagACAACGugGUGUU---ACCa -3'
miRNA:   3'- -UAUCUCU---UGUUGCugCGUAGcuuUGG- -5'
18128 3' -46.1 NC_004680.1 + 22547 0.67 0.991685
Target:  5'- -cGGAucGGCAAUGACGCuuAUCGGcAGCCa -3'
miRNA:   3'- uaUCUc-UUGUUGCUGCG--UAGCU-UUGG- -5'
18128 3' -46.1 NC_004680.1 + 22603 0.73 0.877258
Target:  5'- cAUAGGuGACGgagGCGAuCGUAUCGGAACCc -3'
miRNA:   3'- -UAUCUcUUGU---UGCU-GCGUAGCUUUGG- -5'
18128 3' -46.1 NC_004680.1 + 23117 0.66 0.997476
Target:  5'- ---aAGAGCGGCGAUaGCAUCaGAugcuGCCu -3'
miRNA:   3'- uaucUCUUGUUGCUG-CGUAG-CUu---UGG- -5'
18128 3' -46.1 NC_004680.1 + 23731 0.68 0.985079
Target:  5'- -gAGGGAACGuucucccACGACuGCuUCGAAuaaGCCa -3'
miRNA:   3'- uaUCUCUUGU-------UGCUG-CGuAGCUU---UGG- -5'
18128 3' -46.1 NC_004680.1 + 24744 0.66 0.996957
Target:  5'- gGUGGuGGugGugGugGCAcauccaccUCGGGAUCu -3'
miRNA:   3'- -UAUCuCUugUugCugCGU--------AGCUUUGG- -5'
18128 3' -46.1 NC_004680.1 + 25125 0.67 0.992876
Target:  5'- -cGGAGGugGugGugGCGgugCcAGGCCa -3'
miRNA:   3'- uaUCUCUugUugCugCGUa--GcUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.