miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18128 3' -46.1 NC_004680.1 + 45694 0.67 0.993926
Target:  5'- -gAGGGAACGGCGAagcguucgGCAagGGAGCg -3'
miRNA:   3'- uaUCUCUUGUUGCUg-------CGUagCUUUGg -5'
18128 3' -46.1 NC_004680.1 + 38853 0.68 0.980914
Target:  5'- -aAGuGGAUAcACGACGCcAUCGAcuCCa -3'
miRNA:   3'- uaUCuCUUGU-UGCUGCG-UAGCUuuGG- -5'
18128 3' -46.1 NC_004680.1 + 11388 0.68 0.984057
Target:  5'- -aAGAGGACcggcucaaggcccguAACGAUGUgAUCGAAGCg -3'
miRNA:   3'- uaUCUCUUG---------------UUGCUGCG-UAGCUUUGg -5'
18128 3' -46.1 NC_004680.1 + 40307 0.68 0.987151
Target:  5'- -cAGAuGAACGGCGACGCuguuGUUGGGuuGCUg -3'
miRNA:   3'- uaUCU-CUUGUUGCUGCG----UAGCUU--UGG- -5'
18128 3' -46.1 NC_004680.1 + 4463 0.68 0.988835
Target:  5'- -cGGAacACAGCGcCGUAaCGGAGCCa -3'
miRNA:   3'- uaUCUcuUGUUGCuGCGUaGCUUUGG- -5'
18128 3' -46.1 NC_004680.1 + 22547 0.67 0.991685
Target:  5'- -cGGAucGGCAAUGACGCuuAUCGGcAGCCa -3'
miRNA:   3'- uaUCUc-UUGUUGCUGCG--UAGCU-UUGG- -5'
18128 3' -46.1 NC_004680.1 + 29487 0.67 0.992179
Target:  5'- -gGGAGGAacuGCGAaccgaacgccucgaaCGCAUCGAAGgCg -3'
miRNA:   3'- uaUCUCUUgu-UGCU---------------GCGUAGCUUUgG- -5'
18128 3' -46.1 NC_004680.1 + 25125 0.67 0.992876
Target:  5'- -cGGAGGugGugGugGCGgugCcAGGCCa -3'
miRNA:   3'- uaUCUCUugUugCugCGUa--GcUUUGG- -5'
18128 3' -46.1 NC_004680.1 + 57761 0.67 0.993926
Target:  5'- cUGGuacGACGACGACGCcaUGGAGCUa -3'
miRNA:   3'- uAUCuc-UUGUUGCUGCGuaGCUUUGG- -5'
18128 3' -46.1 NC_004680.1 + 39728 0.68 0.980914
Target:  5'- -cAGAGAGCGccgcagggaGCGcCGCAUgGAGcGCCg -3'
miRNA:   3'- uaUCUCUUGU---------UGCuGCGUAgCUU-UGG- -5'
18128 3' -46.1 NC_004680.1 + 41427 0.69 0.9784
Target:  5'- -cGGAGucGACAgcgaacGCGACGCcAUCGucACCg -3'
miRNA:   3'- uaUCUC--UUGU------UGCUGCG-UAGCuuUGG- -5'
18128 3' -46.1 NC_004680.1 + 37467 0.69 0.977328
Target:  5'- -gGGAGAcGCGAUGACGUuucauucacgccCGAGGCCg -3'
miRNA:   3'- uaUCUCU-UGUUGCUGCGua----------GCUUUGG- -5'
18128 3' -46.1 NC_004680.1 + 15318 0.73 0.868941
Target:  5'- cGUGGAGAACAugGuCGCA--GAAugCg -3'
miRNA:   3'- -UAUCUCUUGUugCuGCGUagCUUugG- -5'
18128 3' -46.1 NC_004680.1 + 58083 0.71 0.927186
Target:  5'- -----cGACAACGGCGCAcUCGGAugCg -3'
miRNA:   3'- uaucucUUGUUGCUGCGU-AGCUUugG- -5'
18128 3' -46.1 NC_004680.1 + 48661 0.71 0.933088
Target:  5'- -gGGAGGACAAgGuugcuCGCGUCG--GCCg -3'
miRNA:   3'- uaUCUCUUGUUgCu----GCGUAGCuuUGG- -5'
18128 3' -46.1 NC_004680.1 + 26229 0.7 0.96207
Target:  5'- --cGAGuAGCGGgGGCG-AUCGGAACCg -3'
miRNA:   3'- uauCUC-UUGUUgCUGCgUAGCUUUGG- -5'
18128 3' -46.1 NC_004680.1 + 3042 0.7 0.96587
Target:  5'- --cGAGAACGGCaACGCgAUCGAcuacGCCu -3'
miRNA:   3'- uauCUCUUGUUGcUGCG-UAGCUu---UGG- -5'
18128 3' -46.1 NC_004680.1 + 57401 0.7 0.96587
Target:  5'- --cGuGGACGACGGcCGCAcUGGAACCc -3'
miRNA:   3'- uauCuCUUGUUGCU-GCGUaGCUUUGG- -5'
18128 3' -46.1 NC_004680.1 + 7234 0.69 0.969394
Target:  5'- -aAGAGGGCAGCGAuucggcuguCGUGUCGguGCa -3'
miRNA:   3'- uaUCUCUUGUUGCU---------GCGUAGCuuUGg -5'
18128 3' -46.1 NC_004680.1 + 44336 0.69 0.969394
Target:  5'- uGUGGGGcuCAACGGCugGCAguUCGAcACCg -3'
miRNA:   3'- -UAUCUCuuGUUGCUG--CGU--AGCUuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.