Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18162 | 5' | -61.2 | NC_004680.1 | + | 12049 | 0.66 | 0.468987 |
Target: 5'- uGCUGCAaaa-CCU-GCUGCCCGAUGg -3' miRNA: 3'- gCGGCGUacuaGGAcCGGCGGGCUGC- -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 46657 | 0.66 | 0.468987 |
Target: 5'- aGCC---UGAgUUCUGGCgGUCCGACGa -3' miRNA: 3'- gCGGcguACU-AGGACCGgCGGGCUGC- -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 14667 | 0.66 | 0.450041 |
Target: 5'- uCGCCGCGUucUCaCUGaaCCGCcCCGACa -3' miRNA: 3'- -GCGGCGUAcuAG-GACc-GGCG-GGCUGc -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 45167 | 0.66 | 0.450041 |
Target: 5'- gGCCcCGUGGUCUcGGCggcucuCGCCgCGACGa -3' miRNA: 3'- gCGGcGUACUAGGaCCG------GCGG-GCUGC- -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 38576 | 0.66 | 0.440727 |
Target: 5'- uGCUGUGgugGAUCCgUGGCUGgCCCGGu- -3' miRNA: 3'- gCGGCGUa--CUAGG-ACCGGC-GGGCUgc -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 17328 | 0.66 | 0.440727 |
Target: 5'- cCGCCGCA-GGUCCcGccaccaggaucaGCCGCuCCGAUu -3' miRNA: 3'- -GCGGCGUaCUAGGaC------------CGGCG-GGCUGc -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 12925 | 0.66 | 0.431524 |
Target: 5'- gCGCUGC-UGGgaagCCUGGCCaGCCagguuCGGCa -3' miRNA: 3'- -GCGGCGuACUa---GGACCGG-CGG-----GCUGc -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 43634 | 0.66 | 0.422434 |
Target: 5'- aGCgGCAgcguUCCcGGCCGCCCuggucgaacguGGCGg -3' miRNA: 3'- gCGgCGUacu-AGGaCCGGCGGG-----------CUGC- -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 12786 | 0.66 | 0.41346 |
Target: 5'- gCGCCGaucgcggcGA-CCUGGCCGCCguacuCGAUGg -3' miRNA: 3'- -GCGGCgua-----CUaGGACCGGCGG-----GCUGC- -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 35905 | 0.66 | 0.409904 |
Target: 5'- aGCCGCGgcaccuuguccgcGAUCaauCUGGCCGCCgGgGCGc -3' miRNA: 3'- gCGGCGUa------------CUAG---GACCGGCGGgC-UGC- -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 44809 | 0.67 | 0.404605 |
Target: 5'- uGuuGuCGUGAUCCaGGUCG-CCGACa -3' miRNA: 3'- gCggC-GUACUAGGaCCGGCgGGCUGc -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 27832 | 0.67 | 0.39587 |
Target: 5'- gGCCGCAg---CUcGGCgGCCgGACGg -3' miRNA: 3'- gCGGCGUacuaGGaCCGgCGGgCUGC- -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 12043 | 0.67 | 0.39587 |
Target: 5'- gGCUacggGCGcGGUCCUcaaGGUCGCCUGAUGg -3' miRNA: 3'- gCGG----CGUaCUAGGA---CCGGCGGGCUGC- -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 42442 | 0.67 | 0.39587 |
Target: 5'- gCGCCGa--GAUCgUGGCCuGCCCaACa -3' miRNA: 3'- -GCGGCguaCUAGgACCGG-CGGGcUGc -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 1837 | 0.67 | 0.37877 |
Target: 5'- uCGCCGCGUGggCg-GGCCGguuCCCGGa- -3' miRNA: 3'- -GCGGCGUACuaGgaCCGGC---GGGCUgc -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 3928 | 0.67 | 0.370408 |
Target: 5'- gCGCCGUAUcGAgaaCCUGGCgGgCaCCGACc -3' miRNA: 3'- -GCGGCGUA-CUa--GGACCGgC-G-GGCUGc -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 14842 | 0.67 | 0.362173 |
Target: 5'- aGCCGCAUGG-CaaucGGCCcuccaGUCCGGCGa -3' miRNA: 3'- gCGGCGUACUaGga--CCGG-----CGGGCUGC- -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 890 | 0.68 | 0.354066 |
Target: 5'- aCGCCGCGaacucGGUCUUGGCuaCGCCCuuccugaguucGACGc -3' miRNA: 3'- -GCGGCGUa----CUAGGACCG--GCGGG-----------CUGC- -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 9862 | 0.68 | 0.346087 |
Target: 5'- gGCCGCGcguugGGUaCCgcuuucacGGCCGCCgCGACa -3' miRNA: 3'- gCGGCGUa----CUA-GGa-------CCGGCGG-GCUGc -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 23437 | 0.68 | 0.338239 |
Target: 5'- gGCaCGC-UGAUCgUgcaGGCCGCCCG-CGu -3' miRNA: 3'- gCG-GCGuACUAGgA---CCGGCGGGCuGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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