Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18162 | 5' | -61.2 | NC_004680.1 | + | 59211 | 0.69 | 0.273471 |
Target: 5'- cCGCCGCGUGAUCggGGuuGUauguggUCGGCGu -3' miRNA: 3'- -GCGGCGUACUAGgaCCggCG------GGCUGC- -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 57317 | 0.68 | 0.315476 |
Target: 5'- uGaCCGCGguaagGAUCCacGCCGgCCGGCGa -3' miRNA: 3'- gC-GGCGUa----CUAGGacCGGCgGGCUGC- -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 55088 | 1.08 | 0.000407 |
Target: 5'- gCGCCGCAUGAUCCUGGCCGCCCGACGu -3' miRNA: 3'- -GCGGCGUACUAGGACCGGCGGGCUGC- -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 53894 | 0.75 | 0.11421 |
Target: 5'- uGCCGCAca--UCUGGCCGCCCGAa- -3' miRNA: 3'- gCGGCGUacuaGGACCGGCGGGCUgc -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 52728 | 0.68 | 0.315476 |
Target: 5'- aGCCGUgacccuuuccGUGAUUCUcGCCGCCCaGGCc -3' miRNA: 3'- gCGGCG----------UACUAGGAcCGGCGGG-CUGc -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 46657 | 0.66 | 0.468987 |
Target: 5'- aGCC---UGAgUUCUGGCgGUCCGACGa -3' miRNA: 3'- gCGGcguACU-AGGACCGgCGGGCUGC- -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 45167 | 0.66 | 0.450041 |
Target: 5'- gGCCcCGUGGUCUcGGCggcucuCGCCgCGACGa -3' miRNA: 3'- gCGGcGUACUAGGaCCG------GCGG-GCUGC- -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 44809 | 0.67 | 0.404605 |
Target: 5'- uGuuGuCGUGAUCCaGGUCG-CCGACa -3' miRNA: 3'- gCggC-GUACUAGGaCCGGCgGGCUGc -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 44561 | 0.69 | 0.286954 |
Target: 5'- aCGCCGCAUGAUcgacgcCCUGGUguccuauCCCGGCc -3' miRNA: 3'- -GCGGCGUACUA------GGACCGgc-----GGGCUGc -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 43634 | 0.66 | 0.422434 |
Target: 5'- aGCgGCAgcguUCCcGGCCGCCCuggucgaacguGGCGg -3' miRNA: 3'- gCGgCGUacu-AGGaCCGGCGGG-----------CUGC- -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 42442 | 0.67 | 0.39587 |
Target: 5'- gCGCCGa--GAUCgUGGCCuGCCCaACa -3' miRNA: 3'- -GCGGCguaCUAGgACCGG-CGGGcUGc -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 41062 | 0.68 | 0.322933 |
Target: 5'- gGCUGgAUGAgCUUGuGCCGCUgGACGa -3' miRNA: 3'- gCGGCgUACUaGGAC-CGGCGGgCUGC- -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 38576 | 0.66 | 0.440727 |
Target: 5'- uGCUGUGgugGAUCCgUGGCUGgCCCGGu- -3' miRNA: 3'- gCGGCGUa--CUAGG-ACCGGC-GGGCUgc -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 36337 | 0.71 | 0.224592 |
Target: 5'- uCGCgGCAgccGUCUUGGCgCGCUCGAUGa -3' miRNA: 3'- -GCGgCGUac-UAGGACCG-GCGGGCUGC- -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 35905 | 0.66 | 0.409904 |
Target: 5'- aGCCGCGgcaccuuguccgcGAUCaauCUGGCCGCCgGgGCGc -3' miRNA: 3'- gCGGCGUa------------CUAG---GACCGGCGGgC-UGC- -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 33545 | 0.69 | 0.30815 |
Target: 5'- uCGCCGCcgGuuUCCUgacGGgCGCCCGcCGu -3' miRNA: 3'- -GCGGCGuaCu-AGGA---CCgGCGGGCuGC- -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 29168 | 0.68 | 0.315476 |
Target: 5'- uGCCGCAUGAUCUUGGaaucggUGCgCGAa- -3' miRNA: 3'- gCGGCGUACUAGGACCg-----GCGgGCUgc -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 27832 | 0.67 | 0.39587 |
Target: 5'- gGCCGCAg---CUcGGCgGCCgGACGg -3' miRNA: 3'- gCGGCGUacuaGGaCCGgCGGgCUGC- -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 27579 | 0.71 | 0.208266 |
Target: 5'- cCGCCGUacGUGAa--UGGCCGCcCCGGCa -3' miRNA: 3'- -GCGGCG--UACUaggACCGGCG-GGCUGc -5' |
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18162 | 5' | -61.2 | NC_004680.1 | + | 23437 | 0.68 | 0.338239 |
Target: 5'- gGCaCGC-UGAUCgUgcaGGCCGCCCG-CGu -3' miRNA: 3'- gCG-GCGuACUAGgA---CCGGCGGGCuGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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