Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18176 | 5' | -55.8 | NC_004680.1 | + | 38877 | 0.66 | 0.691777 |
Target: 5'- gUCCCAGCcguuggagggucccGGCGCGgGGGGCGggGgaACCa -3' miRNA: 3'- aAGGGUCG--------------UCGCGU-UCCUGUagC--UGG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 25089 | 0.66 | 0.684139 |
Target: 5'- -cCCCAcuaacuacGCGGC-CGGGGACggUGGCCu -3' miRNA: 3'- aaGGGU--------CGUCGcGUUCCUGuaGCUGG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 37910 | 0.66 | 0.684139 |
Target: 5'- --aCCGGCGuGCGCcuGGACuGUCG-CCg -3' miRNA: 3'- aagGGUCGU-CGCGuuCCUG-UAGCuGG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 6347 | 0.66 | 0.673187 |
Target: 5'- -aCCCGGCGucacCGUAAGGugAcgugcagCGACCg -3' miRNA: 3'- aaGGGUCGUc---GCGUUCCugUa------GCUGG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 36158 | 0.66 | 0.673187 |
Target: 5'- aUCCCAuGCc-CGCAGGGcgGCGagGACCg -3' miRNA: 3'- aAGGGU-CGucGCGUUCC--UGUagCUGG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 12310 | 0.66 | 0.673187 |
Target: 5'- --aCCAGUGGgGCGGGGGCGaCcGCCg -3' miRNA: 3'- aagGGUCGUCgCGUUCCUGUaGcUGG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 31045 | 0.66 | 0.673187 |
Target: 5'- --aCCAGCAGUGCGAcGAuCAUccccgcgaCGACCg -3' miRNA: 3'- aagGGUCGUCGCGUUcCU-GUA--------GCUGG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 622 | 0.66 | 0.669894 |
Target: 5'- -cCCCAGguGUGCGAcuucauugaggaucGGAUgguguUCGGCCc -3' miRNA: 3'- aaGGGUCguCGCGUU--------------CCUGu----AGCUGG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 16281 | 0.66 | 0.651177 |
Target: 5'- -gCCCAGUAuGCGUuGGGGCGU-GACg -3' miRNA: 3'- aaGGGUCGU-CGCGuUCCUGUAgCUGg -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 43561 | 0.66 | 0.651177 |
Target: 5'- gUCCCacguguAGCGGUGCcAGGACcgGUUGugCc -3' miRNA: 3'- aAGGG------UCGUCGCGuUCCUG--UAGCugG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 41832 | 0.66 | 0.651177 |
Target: 5'- -gUCCAGCAGaUGCGGcGGGCgggGUCGGCg -3' miRNA: 3'- aaGGGUCGUC-GCGUU-CCUG---UAGCUGg -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 8747 | 0.67 | 0.64014 |
Target: 5'- aUCCCggAGCAGacCGUgAAGGACcgCGACg -3' miRNA: 3'- aAGGG--UCGUC--GCG-UUCCUGuaGCUGg -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 20883 | 0.67 | 0.64014 |
Target: 5'- --gCCGGCAGCGuCGAGGAaguUCGGg- -3' miRNA: 3'- aagGGUCGUCGC-GUUCCUgu-AGCUgg -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 41398 | 0.67 | 0.629096 |
Target: 5'- aUgCCGGCGGCgaucaGCAGcGGCAUCGuCCa -3' miRNA: 3'- aAgGGUCGUCG-----CGUUcCUGUAGCuGG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 53642 | 0.67 | 0.629096 |
Target: 5'- gUCCUggAGgAGUaCGAGGGCGUCGGuCCa -3' miRNA: 3'- aAGGG--UCgUCGcGUUCCUGUAGCU-GG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 51809 | 0.67 | 0.618055 |
Target: 5'- -aCCgCAGCAGCgGCAAGcAgAUCGGCa -3' miRNA: 3'- aaGG-GUCGUCG-CGUUCcUgUAGCUGg -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 50045 | 0.67 | 0.618055 |
Target: 5'- aUCUCGGCGGCGaCGuGGGCcUCGAa- -3' miRNA: 3'- aAGGGUCGUCGC-GUuCCUGuAGCUgg -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 33414 | 0.67 | 0.596018 |
Target: 5'- -gCUCGGCGGUGCGGGaGGCccCGAUCu -3' miRNA: 3'- aaGGGUCGUCGCGUUC-CUGuaGCUGG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 49874 | 0.67 | 0.596018 |
Target: 5'- -cCCCGGUauccAGCGCAgcgAGGAUGUCuucGCCa -3' miRNA: 3'- aaGGGUCG----UCGCGU---UCCUGUAGc--UGG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 27543 | 0.67 | 0.596018 |
Target: 5'- aUCCCgcgccaGGCAGCGCG-GGACc-CGGCg -3' miRNA: 3'- aAGGG------UCGUCGCGUuCCUGuaGCUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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