Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18176 | 5' | -55.8 | NC_004680.1 | + | 51809 | 0.67 | 0.618055 |
Target: 5'- -aCCgCAGCAGCgGCAAGcAgAUCGGCa -3' miRNA: 3'- aaGG-GUCGUCG-CGUUCcUgUAGCUGg -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 38877 | 0.66 | 0.691777 |
Target: 5'- gUCCCAGCcguuggagggucccGGCGCGgGGGGCGggGgaACCa -3' miRNA: 3'- aAGGGUCG--------------UCGCGU-UCCUGUagC--UGG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 6347 | 0.66 | 0.673187 |
Target: 5'- -aCCCGGCGucacCGUAAGGugAcgugcagCGACCg -3' miRNA: 3'- aaGGGUCGUc---GCGUUCCugUa------GCUGG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 31045 | 0.66 | 0.673187 |
Target: 5'- --aCCAGCAGUGCGAcGAuCAUccccgcgaCGACCg -3' miRNA: 3'- aagGGUCGUCGCGUUcCU-GUA--------GCUGG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 41832 | 0.66 | 0.651177 |
Target: 5'- -gUCCAGCAGaUGCGGcGGGCgggGUCGGCg -3' miRNA: 3'- aaGGGUCGUC-GCGUU-CCUG---UAGCUGg -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 43561 | 0.66 | 0.651177 |
Target: 5'- gUCCCacguguAGCGGUGCcAGGACcgGUUGugCc -3' miRNA: 3'- aAGGG------UCGUCGCGuUCCUG--UAGCugG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 20883 | 0.67 | 0.64014 |
Target: 5'- --gCCGGCAGCGuCGAGGAaguUCGGg- -3' miRNA: 3'- aagGGUCGUCGC-GUUCCUgu-AGCUgg -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 41398 | 0.67 | 0.629096 |
Target: 5'- aUgCCGGCGGCgaucaGCAGcGGCAUCGuCCa -3' miRNA: 3'- aAgGGUCGUCG-----CGUUcCUGUAGCuGG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 53642 | 0.67 | 0.629096 |
Target: 5'- gUCCUggAGgAGUaCGAGGGCGUCGGuCCa -3' miRNA: 3'- aAGGG--UCgUCGcGUUCCUGUAGCU-GG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 56631 | 0.7 | 0.419618 |
Target: 5'- aUUCCacgaaCGGCAGgGCGAGGGCGaugucUCGGCg -3' miRNA: 3'- -AAGG-----GUCGUCgCGUUCCUGU-----AGCUGg -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 16669 | 0.68 | 0.574106 |
Target: 5'- gUCCCAGCGGgGUucaAAGGcCA-CGACa -3' miRNA: 3'- aAGGGUCGUCgCG---UUCCuGUaGCUGg -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 23632 | 0.68 | 0.574106 |
Target: 5'- -aCCCggaAGCAcCGCGAGGGCAgugUUGAUCa -3' miRNA: 3'- aaGGG---UCGUcGCGUUCCUGU---AGCUGG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 27543 | 0.67 | 0.596018 |
Target: 5'- aUCCCgcgccaGGCAGCGCG-GGACc-CGGCg -3' miRNA: 3'- aAGGG------UCGUCGCGUuCCUGuaGCUGg -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 57245 | 0.69 | 0.488963 |
Target: 5'- gUUCUCGGCGGCGCcGGGGaAUCcguGCCa -3' miRNA: 3'- -AAGGGUCGUCGCGuUCCUgUAGc--UGG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 49874 | 0.67 | 0.596018 |
Target: 5'- -cCCCGGUauccAGCGCAgcgAGGAUGUCuucGCCa -3' miRNA: 3'- aaGGGUCG----UCGCGU---UCCUGUAGc--UGG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 34639 | 0.67 | 0.585042 |
Target: 5'- -aCCCacaacaugGGCGGCGCAGacGGAUA-CGACUg -3' miRNA: 3'- aaGGG--------UCGUCGCGUU--CCUGUaGCUGG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 59064 | 0.7 | 0.448629 |
Target: 5'- -cCCCAGCGGUGUgugguguguuGGGGGCAUguGCCg -3' miRNA: 3'- aaGGGUCGUCGCG----------UUCCUGUAgcUGG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 11145 | 0.76 | 0.179962 |
Target: 5'- -gCCCGGCAGCaggaugccaucgacgGCGGGaGACAUCGACg -3' miRNA: 3'- aaGGGUCGUCG---------------CGUUC-CUGUAGCUGg -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 33414 | 0.67 | 0.596018 |
Target: 5'- -gCUCGGCGGUGCGGGaGGCccCGAUCu -3' miRNA: 3'- aaGGGUCGUCGCGUUC-CUGuaGCUGG- -5' |
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18176 | 5' | -55.8 | NC_004680.1 | + | 34079 | 0.67 | 0.589429 |
Target: 5'- -cCCCAGCAGCGC--GGAacacgccacgccacaCGUCGuaguCCg -3' miRNA: 3'- aaGGGUCGUCGCGuuCCU---------------GUAGCu---GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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