miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18188 3' -64.8 NC_004680.1 + 25704 1.12 0.000075
Target:  5'- cGCCUGCGCCACAGGCCCCGGCGGAGCa -3'
miRNA:   3'- -CGGACGCGGUGUCCGGGGCCGCCUCG- -5'
18188 3' -64.8 NC_004680.1 + 6109 0.77 0.04804
Target:  5'- aCCUGCGcCCGCAcccgaguGGCCCCGGUGGuGa -3'
miRNA:   3'- cGGACGC-GGUGU-------CCGGGGCCGCCuCg -5'
18188 3' -64.8 NC_004680.1 + 25039 0.75 0.066747
Target:  5'- aCCUGgGCagGCAGGUCCCGGUGGcGGUg -3'
miRNA:   3'- cGGACgCGg-UGUCCGGGGCCGCC-UCG- -5'
18188 3' -64.8 NC_004680.1 + 5919 0.71 0.120042
Target:  5'- uGCCgaGCGCCGCAGcGCUCacacCGGAGCa -3'
miRNA:   3'- -CGGa-CGCGGUGUC-CGGGgcc-GCCUCG- -5'
18188 3' -64.8 NC_004680.1 + 596 0.71 0.123231
Target:  5'- ----uCGUCACAGGCUCCGGUGG-GCa -3'
miRNA:   3'- cggacGCGGUGUCCGGGGCCGCCuCG- -5'
18188 3' -64.8 NC_004680.1 + 38744 0.7 0.147839
Target:  5'- uCCUGUGggugaCAUuGGUCCCGGCGcGGGCa -3'
miRNA:   3'- cGGACGCg----GUGuCCGGGGCCGC-CUCG- -5'
18188 3' -64.8 NC_004680.1 + 11073 0.7 0.16384
Target:  5'- uCCUGCuGCCGgGcGGCCuuGGUGGcGGCc -3'
miRNA:   3'- cGGACG-CGGUgU-CCGGggCCGCC-UCG- -5'
18188 3' -64.8 NC_004680.1 + 881 0.69 0.168076
Target:  5'- gGUUUGaCGCUGCcGGCaauCCGGUGGGGCg -3'
miRNA:   3'- -CGGAC-GCGGUGuCCGg--GGCCGCCUCG- -5'
18188 3' -64.8 NC_004680.1 + 25840 0.69 0.171973
Target:  5'- cGCCaccacgGCGagaCCACGGaGCCCUGGUgauccccGGAGCg -3'
miRNA:   3'- -CGGa-----CGC---GGUGUC-CGGGGCCG-------CCUCG- -5'
18188 3' -64.8 NC_004680.1 + 56473 0.69 0.176845
Target:  5'- cGUCUGCGCCGCuguugguGGCgUCGa-GGAGCg -3'
miRNA:   3'- -CGGACGCGGUGu------CCGgGGCcgCCUCG- -5'
18188 3' -64.8 NC_004680.1 + 12440 0.69 0.176845
Target:  5'- aCCcGCGCCagcaccagacGCGGGacuCCCCGGCGcGGCa -3'
miRNA:   3'- cGGaCGCGG----------UGUCC---GGGGCCGCcUCG- -5'
18188 3' -64.8 NC_004680.1 + 31841 0.69 0.176845
Target:  5'- aGCCUcCGCCACAccGaCCCCGGCuGAGa -3'
miRNA:   3'- -CGGAcGCGGUGU--CcGGGGCCGcCUCg -5'
18188 3' -64.8 NC_004680.1 + 27542 0.69 0.180922
Target:  5'- uCCcGCGCCaggcagcGCGGGaCCCGGCGaAGCa -3'
miRNA:   3'- cGGaCGCGG-------UGUCCgGGGCCGCcUCG- -5'
18188 3' -64.8 NC_004680.1 + 39819 0.69 0.18138
Target:  5'- cGCCgcagggaGCGCCGCAGagaGCgCCGcaCGGAGCg -3'
miRNA:   3'- -CGGa------CGCGGUGUC---CGgGGCc-GCCUCG- -5'
18188 3' -64.8 NC_004680.1 + 502 0.69 0.18138
Target:  5'- aGgCUGCGCCGguGuGCCCac-CGGAGCc -3'
miRNA:   3'- -CgGACGCGGUguC-CGGGgccGCCUCG- -5'
18188 3' -64.8 NC_004680.1 + 39615 0.69 0.18138
Target:  5'- cGCCgcauggaGCGCCGCAGggaGCgCCGcaCGGAGCg -3'
miRNA:   3'- -CGGa------CGCGGUGUC---CGgGGCc-GCCUCG- -5'
18188 3' -64.8 NC_004680.1 + 47609 0.68 0.195608
Target:  5'- aGCCgaaccGCGCCACcgucgAGGCgUgGGCuGAGCa -3'
miRNA:   3'- -CGGa----CGCGGUG-----UCCGgGgCCGcCUCG- -5'
18188 3' -64.8 NC_004680.1 + 21434 0.68 0.195608
Target:  5'- gGCCUGgcgauuuucCGCauggagaaCGCAGGCUCCGGCGuuGCu -3'
miRNA:   3'- -CGGAC---------GCG--------GUGUCCGGGGCCGCcuCG- -5'
18188 3' -64.8 NC_004680.1 + 21479 0.68 0.210802
Target:  5'- cGCCagaugaGgGCCACcGGCCCgGGCuGGGUg -3'
miRNA:   3'- -CGGa-----CgCGGUGuCCGGGgCCGcCUCG- -5'
18188 3' -64.8 NC_004680.1 + 42075 0.68 0.210802
Target:  5'- aCCUGCucgaaugaguGCCGcCGGGCgCagaGGUGGGGCg -3'
miRNA:   3'- cGGACG----------CGGU-GUCCGgGg--CCGCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.