miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18188 3' -64.8 NC_004680.1 + 502 0.69 0.18138
Target:  5'- aGgCUGCGCCGguGuGCCCac-CGGAGCc -3'
miRNA:   3'- -CgGACGCGGUguC-CGGGgccGCCUCG- -5'
18188 3' -64.8 NC_004680.1 + 596 0.71 0.123231
Target:  5'- ----uCGUCACAGGCUCCGGUGG-GCa -3'
miRNA:   3'- cggacGCGGUGUCCGGGGCCGCCuCG- -5'
18188 3' -64.8 NC_004680.1 + 881 0.69 0.168076
Target:  5'- gGUUUGaCGCUGCcGGCaauCCGGUGGGGCg -3'
miRNA:   3'- -CGGAC-GCGGUGuCCGg--GGCCGCCUCG- -5'
18188 3' -64.8 NC_004680.1 + 5216 0.68 0.227001
Target:  5'- gGCC-GCugGCCgGCAGaCCUCGGCGGAcGCg -3'
miRNA:   3'- -CGGaCG--CGG-UGUCcGGGGCCGCCU-CG- -5'
18188 3' -64.8 NC_004680.1 + 5919 0.71 0.120042
Target:  5'- uGCCgaGCGCCGCAGcGCUCacacCGGAGCa -3'
miRNA:   3'- -CGGa-CGCGGUGUC-CGGGgcc-GCCUCG- -5'
18188 3' -64.8 NC_004680.1 + 5971 0.66 0.275378
Target:  5'- ---aGCGCCGCAGcaacGUCaUCGGCGGuAGCa -3'
miRNA:   3'- cggaCGCGGUGUC----CGG-GGCCGCC-UCG- -5'
18188 3' -64.8 NC_004680.1 + 6109 0.77 0.04804
Target:  5'- aCCUGCGcCCGCAcccgaguGGCCCCGGUGGuGa -3'
miRNA:   3'- cGGACGC-GGUGU-------CCGGGGCCGCCuCg -5'
18188 3' -64.8 NC_004680.1 + 11073 0.7 0.16384
Target:  5'- uCCUGCuGCCGgGcGGCCuuGGUGGcGGCc -3'
miRNA:   3'- cGGACG-CGGUgU-CCGGggCCGCC-UCG- -5'
18188 3' -64.8 NC_004680.1 + 11167 0.66 0.268906
Target:  5'- cGCCgggGcCGCCACcaAGGCcgCCCGGCagcaGGAuGCc -3'
miRNA:   3'- -CGGa--C-GCGGUG--UCCG--GGGCCG----CCU-CG- -5'
18188 3' -64.8 NC_004680.1 + 11342 0.67 0.238377
Target:  5'- uCCUGCGgCAugcCAGGaauCCCCGGCGGc-- -3'
miRNA:   3'- cGGACGCgGU---GUCC---GGGGCCGCCucg -5'
18188 3' -64.8 NC_004680.1 + 11890 0.66 0.281974
Target:  5'- uGCCcggGgGUUGCAGacggcGCCCCGGgGaGAGCg -3'
miRNA:   3'- -CGGa--CgCGGUGUC-----CGGGGCCgC-CUCG- -5'
18188 3' -64.8 NC_004680.1 + 12440 0.69 0.176845
Target:  5'- aCCcGCGCCagcaccagacGCGGGacuCCCCGGCGcGGCa -3'
miRNA:   3'- cGGaCGCGG----------UGUCC---GGGGCCGCcUCG- -5'
18188 3' -64.8 NC_004680.1 + 12474 0.67 0.232631
Target:  5'- uGCCggUGCGCCACAaaGCCuguucaCCGGUGG-GCc -3'
miRNA:   3'- -CGG--ACGCGGUGUc-CGG------GGCCGCCuCG- -5'
18188 3' -64.8 NC_004680.1 + 19243 0.66 0.281974
Target:  5'- cGCC-GUGgaUACAGGUUCCGGCGGuGa -3'
miRNA:   3'- -CGGaCGCg-GUGUCCGGGGCCGCCuCg -5'
18188 3' -64.8 NC_004680.1 + 19705 0.67 0.238377
Target:  5'- gGUCauggGCgGCCACGGuacGCCaCCuGGUGGAGCg -3'
miRNA:   3'- -CGGa---CG-CGGUGUC---CGG-GG-CCGCCUCG- -5'
18188 3' -64.8 NC_004680.1 + 19778 0.66 0.281974
Target:  5'- uCCgGCGgCAaugguGGCCCUGGUGGuGGCu -3'
miRNA:   3'- cGGaCGCgGUgu---CCGGGGCCGCC-UCG- -5'
18188 3' -64.8 NC_004680.1 + 21213 0.67 0.256331
Target:  5'- gGCCgGUGCCGCcGGagCCGGUGGAu- -3'
miRNA:   3'- -CGGaCGCGGUGuCCggGGCCGCCUcg -5'
18188 3' -64.8 NC_004680.1 + 21355 0.66 0.29554
Target:  5'- aGCCccGUcgGCCACGuauggcGGCgCCGGCGGuGUa -3'
miRNA:   3'- -CGGa-CG--CGGUGU------CCGgGGCCGCCuCG- -5'
18188 3' -64.8 NC_004680.1 + 21434 0.68 0.195608
Target:  5'- gGCCUGgcgauuuucCGCauggagaaCGCAGGCUCCGGCGuuGCu -3'
miRNA:   3'- -CGGAC---------GCG--------GUGUCCGGGGCCGCcuCG- -5'
18188 3' -64.8 NC_004680.1 + 21445 0.66 0.29554
Target:  5'- cGCCgGCGCCGCcauacguGGCCgaCGGgGcuGAGCc -3'
miRNA:   3'- -CGGaCGCGGUGu------CCGGg-GCCgC--CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.