Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18188 | 3' | -64.8 | NC_004680.1 | + | 19243 | 0.66 | 0.281974 |
Target: 5'- cGCC-GUGgaUACAGGUUCCGGCGGuGa -3' miRNA: 3'- -CGGaCGCg-GUGUCCGGGGCCGCCuCg -5' |
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18188 | 3' | -64.8 | NC_004680.1 | + | 47609 | 0.68 | 0.195608 |
Target: 5'- aGCCgaaccGCGCCACcgucgAGGCgUgGGCuGAGCa -3' miRNA: 3'- -CGGa----CGCGGUG-----UCCGgGgCCGcCUCG- -5' |
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18188 | 3' | -64.8 | NC_004680.1 | + | 42075 | 0.68 | 0.210802 |
Target: 5'- aCCUGCucgaaugaguGCCGcCGGGCgCagaGGUGGGGCg -3' miRNA: 3'- cGGACG----------CGGU-GUCCGgGg--CCGCCUCG- -5' |
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18188 | 3' | -64.8 | NC_004680.1 | + | 21479 | 0.68 | 0.210802 |
Target: 5'- cGCCagaugaGgGCCACcGGCCCgGGCuGGGUg -3' miRNA: 3'- -CGGa-----CgCGGUGuCCGGGgCCGcCUCG- -5' |
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18188 | 3' | -64.8 | NC_004680.1 | + | 5216 | 0.68 | 0.227001 |
Target: 5'- gGCC-GCugGCCgGCAGaCCUCGGCGGAcGCg -3' miRNA: 3'- -CGGaCG--CGG-UGUCcGGGGCCGCCU-CG- -5' |
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18188 | 3' | -64.8 | NC_004680.1 | + | 24612 | 0.67 | 0.232631 |
Target: 5'- uCC-GUuaCGCgAGGUCUCGGCGGGGCu -3' miRNA: 3'- cGGaCGcgGUG-UCCGGGGCCGCCUCG- -5' |
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18188 | 3' | -64.8 | NC_004680.1 | + | 12474 | 0.67 | 0.232631 |
Target: 5'- uGCCggUGCGCCACAaaGCCuguucaCCGGUGG-GCc -3' miRNA: 3'- -CGG--ACGCGGUGUc-CGG------GGCCGCCuCG- -5' |
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18188 | 3' | -64.8 | NC_004680.1 | + | 19705 | 0.67 | 0.238377 |
Target: 5'- gGUCauggGCgGCCACGGuacGCCaCCuGGUGGAGCg -3' miRNA: 3'- -CGGa---CG-CGGUGUC---CGG-GG-CCGCCUCG- -5' |
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18188 | 3' | -64.8 | NC_004680.1 | + | 21213 | 0.67 | 0.256331 |
Target: 5'- gGCCgGUGCCGCcGGagCCGGUGGAu- -3' miRNA: 3'- -CGGaCGCGGUGuCCggGGCCGCCUcg -5' |
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18188 | 3' | -64.8 | NC_004680.1 | + | 21434 | 0.68 | 0.195608 |
Target: 5'- gGCCUGgcgauuuucCGCauggagaaCGCAGGCUCCGGCGuuGCu -3' miRNA: 3'- -CGGAC---------GCG--------GUGUCCGGGGCCGCcuCG- -5' |
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18188 | 3' | -64.8 | NC_004680.1 | + | 39819 | 0.69 | 0.18138 |
Target: 5'- cGCCgcagggaGCGCCGCAGagaGCgCCGcaCGGAGCg -3' miRNA: 3'- -CGGa------CGCGGUGUC---CGgGGCc-GCCUCG- -5' |
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18188 | 3' | -64.8 | NC_004680.1 | + | 39615 | 0.69 | 0.18138 |
Target: 5'- cGCCgcauggaGCGCCGCAGggaGCgCCGcaCGGAGCg -3' miRNA: 3'- -CGGa------CGCGGUGUC---CGgGGCc-GCCUCG- -5' |
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18188 | 3' | -64.8 | NC_004680.1 | + | 25039 | 0.75 | 0.066747 |
Target: 5'- aCCUGgGCagGCAGGUCCCGGUGGcGGUg -3' miRNA: 3'- cGGACgCGg-UGUCCGGGGCCGCC-UCG- -5' |
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18188 | 3' | -64.8 | NC_004680.1 | + | 5919 | 0.71 | 0.120042 |
Target: 5'- uGCCgaGCGCCGCAGcGCUCacacCGGAGCa -3' miRNA: 3'- -CGGa-CGCGGUGUC-CGGGgcc-GCCUCG- -5' |
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18188 | 3' | -64.8 | NC_004680.1 | + | 38744 | 0.7 | 0.147839 |
Target: 5'- uCCUGUGggugaCAUuGGUCCCGGCGcGGGCa -3' miRNA: 3'- cGGACGCg----GUGuCCGGGGCCGC-CUCG- -5' |
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18188 | 3' | -64.8 | NC_004680.1 | + | 11073 | 0.7 | 0.16384 |
Target: 5'- uCCUGCuGCCGgGcGGCCuuGGUGGcGGCc -3' miRNA: 3'- cGGACG-CGGUgU-CCGGggCCGCC-UCG- -5' |
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18188 | 3' | -64.8 | NC_004680.1 | + | 881 | 0.69 | 0.168076 |
Target: 5'- gGUUUGaCGCUGCcGGCaauCCGGUGGGGCg -3' miRNA: 3'- -CGGAC-GCGGUGuCCGg--GGCCGCCUCG- -5' |
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18188 | 3' | -64.8 | NC_004680.1 | + | 25840 | 0.69 | 0.171973 |
Target: 5'- cGCCaccacgGCGagaCCACGGaGCCCUGGUgauccccGGAGCg -3' miRNA: 3'- -CGGa-----CGC---GGUGUC-CGGGGCCG-------CCUCG- -5' |
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18188 | 3' | -64.8 | NC_004680.1 | + | 31841 | 0.69 | 0.176845 |
Target: 5'- aGCCUcCGCCACAccGaCCCCGGCuGAGa -3' miRNA: 3'- -CGGAcGCGGUGU--CcGGGGCCGcCUCg -5' |
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18188 | 3' | -64.8 | NC_004680.1 | + | 502 | 0.69 | 0.18138 |
Target: 5'- aGgCUGCGCCGguGuGCCCac-CGGAGCc -3' miRNA: 3'- -CgGACGCGGUguC-CGGGgccGCCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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