miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18193 5' -63.2 NC_004680.1 + 28256 1.08 0.00029
Target:  5'- cCGACGCCGACACCGCCCGCGCCGUCGa -3'
miRNA:   3'- -GCUGCGGCUGUGGCGGGCGCGGCAGC- -5'
18193 5' -63.2 NC_004680.1 + 36516 0.78 0.055113
Target:  5'- aGAuguuCGCCGACACCGCUCGCaagcucgucGCUGUCGa -3'
miRNA:   3'- gCU----GCGGCUGUGGCGGGCG---------CGGCAGC- -5'
18193 5' -63.2 NC_004680.1 + 21430 0.77 0.066537
Target:  5'- aCGugGCCGACgggGCUgaGCCCGCGCgGUCc -3'
miRNA:   3'- -GCugCGGCUG---UGG--CGGGCGCGgCAGc -5'
18193 5' -63.2 NC_004680.1 + 45529 0.73 0.142776
Target:  5'- gCGACGCCagacGCGCCGCCCuCGCauuCGUCa -3'
miRNA:   3'- -GCUGCGGc---UGUGGCGGGcGCG---GCAGc -5'
18193 5' -63.2 NC_004680.1 + 46448 0.72 0.162223
Target:  5'- aCGGUGuuaCCaGCACCGCCCGgGCCGUCu -3'
miRNA:   3'- -GCUGC---GGcUGUGGCGGGCgCGGCAGc -5'
18193 5' -63.2 NC_004680.1 + 13963 0.72 0.166388
Target:  5'- gGAUGCCGuuACCGUCCcaguCGCCGUUGc -3'
miRNA:   3'- gCUGCGGCugUGGCGGGc---GCGGCAGC- -5'
18193 5' -63.2 NC_004680.1 + 4949 0.71 0.170649
Target:  5'- cCGACGUCGGCACgGCCgaCGaUGCCGUUu -3'
miRNA:   3'- -GCUGCGGCUGUGgCGG--GC-GCGGCAGc -5'
18193 5' -63.2 NC_004680.1 + 21462 0.71 0.184022
Target:  5'- gGAC-CCGAgaaguaCACCGCCgGCGCCGcCa -3'
miRNA:   3'- gCUGcGGCU------GUGGCGGgCGCGGCaGc -5'
18193 5' -63.2 NC_004680.1 + 38764 0.7 0.203287
Target:  5'- cCGGCGCgGGCAugguucccCCGCCCcccGCGCCGg-- -3'
miRNA:   3'- -GCUGCGgCUGU--------GGCGGG---CGCGGCagc -5'
18193 5' -63.2 NC_004680.1 + 27387 0.7 0.208369
Target:  5'- -uGCGUCGACACCGaCCGUGCUGcCu -3'
miRNA:   3'- gcUGCGGCUGUGGCgGGCGCGGCaGc -5'
18193 5' -63.2 NC_004680.1 + 46078 0.7 0.218863
Target:  5'- --cCGCCGACACCacGCCCuCGCCGa-- -3'
miRNA:   3'- gcuGCGGCUGUGG--CGGGcGCGGCagc -5'
18193 5' -63.2 NC_004680.1 + 28189 0.69 0.235447
Target:  5'- cCGGuCGUgGACACCcgGCCCGUGCUGaUCa -3'
miRNA:   3'- -GCU-GCGgCUGUGG--CGGGCGCGGC-AGc -5'
18193 5' -63.2 NC_004680.1 + 19166 0.69 0.241205
Target:  5'- aCGuCGCCGGaua-GCCCGcCGUCGUCGa -3'
miRNA:   3'- -GCuGCGGCUguggCGGGC-GCGGCAGC- -5'
18193 5' -63.2 NC_004680.1 + 9849 0.69 0.241205
Target:  5'- uGGCGCgGugGCUGgCCGCG-CGUUGg -3'
miRNA:   3'- gCUGCGgCugUGGCgGGCGCgGCAGC- -5'
18193 5' -63.2 NC_004680.1 + 20291 0.69 0.24708
Target:  5'- gGugGgCGGCACUGUUCGC-CCGUUGa -3'
miRNA:   3'- gCugCgGCUGUGGCGGGCGcGGCAGC- -5'
18193 5' -63.2 NC_004680.1 + 4207 0.69 0.250662
Target:  5'- gCGuuCGCgGACAUCGCagaccgcggcggaCGCGCCGUUGa -3'
miRNA:   3'- -GCu-GCGgCUGUGGCGg------------GCGCGGCAGC- -5'
18193 5' -63.2 NC_004680.1 + 34556 0.69 0.253073
Target:  5'- --cCGUCuGCGCCGCCCauguuguggGUGCCGUCGc -3'
miRNA:   3'- gcuGCGGcUGUGGCGGG---------CGCGGCAGC- -5'
18193 5' -63.2 NC_004680.1 + 48183 0.69 0.253073
Target:  5'- cCGGCGCUcauGACAuCCGCCCacGCGCCa--- -3'
miRNA:   3'- -GCUGCGG---CUGU-GGCGGG--CGCGGcagc -5'
18193 5' -63.2 NC_004680.1 + 852 0.69 0.259185
Target:  5'- uCGACGCCaGC-CCGCUCGaacCGCCGaCGg -3'
miRNA:   3'- -GCUGCGGcUGuGGCGGGC---GCGGCaGC- -5'
18193 5' -63.2 NC_004680.1 + 11170 0.68 0.27177
Target:  5'- gGGCGCCGGgGCCGCCaccaaG-GCCGccCGg -3'
miRNA:   3'- gCUGCGGCUgUGGCGGg----CgCGGCa-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.