miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18193 5' -63.2 NC_004680.1 + 42744 0.67 0.349777
Target:  5'- uCGugGCUGGgACCGCCggcagUGCGCUGa-- -3'
miRNA:   3'- -GCugCGGCUgUGGCGG-----GCGCGGCagc -5'
18193 5' -63.2 NC_004680.1 + 743 0.68 0.278244
Target:  5'- -cGCGUgGGCACCGUuuGgcugGCCGUCGg -3'
miRNA:   3'- gcUGCGgCUGUGGCGggCg---CGGCAGC- -5'
18193 5' -63.2 NC_004680.1 + 16788 0.68 0.278244
Target:  5'- aCGAC-CCGACACCGgCggaaGCGUCGUUc -3'
miRNA:   3'- -GCUGcGGCUGUGGCgGg---CGCGGCAGc -5'
18193 5' -63.2 NC_004680.1 + 59325 0.68 0.278244
Target:  5'- -aACGCCGACA-CGCCCGCaaGCC-UCu -3'
miRNA:   3'- gcUGCGGCUGUgGCGGGCG--CGGcAGc -5'
18193 5' -63.2 NC_004680.1 + 40886 0.67 0.327016
Target:  5'- ---aGUgGAcCACCGCCCGCGgCGUgGa -3'
miRNA:   3'- gcugCGgCU-GUGGCGGGCGCgGCAgC- -5'
18193 5' -63.2 NC_004680.1 + 28966 0.67 0.327016
Target:  5'- uCGACGCCGccgaacGCGCgGCCCGCa-CGUUc -3'
miRNA:   3'- -GCUGCGGC------UGUGgCGGGCGcgGCAGc -5'
18193 5' -63.2 NC_004680.1 + 6613 0.67 0.327016
Target:  5'- uCGAUGuuGACcuguacuuGCCGCCCGguuCGCCGg-- -3'
miRNA:   3'- -GCUGCggCUG--------UGGCGGGC---GCGGCagc -5'
18193 5' -63.2 NC_004680.1 + 22139 0.67 0.334479
Target:  5'- ----cCCGACGCCGCgCGCGCaGUCu -3'
miRNA:   3'- gcugcGGCUGUGGCGgGCGCGgCAGc -5'
18193 5' -63.2 NC_004680.1 + 41744 0.67 0.342066
Target:  5'- --cCGCCGACcCCGCCCGcCGCa-UCu -3'
miRNA:   3'- gcuGCGGCUGuGGCGGGC-GCGgcAGc -5'
18193 5' -63.2 NC_004680.1 + 34556 0.69 0.253073
Target:  5'- --cCGUCuGCGCCGCCCauguuguggGUGCCGUCGc -3'
miRNA:   3'- gcuGCGGcUGUGGCGGG---------CGCGGCAGC- -5'
18193 5' -63.2 NC_004680.1 + 4207 0.69 0.250662
Target:  5'- gCGuuCGCgGACAUCGCagaccgcggcggaCGCGCCGUUGa -3'
miRNA:   3'- -GCu-GCGgCUGUGGCGg------------GCGCGGCAGC- -5'
18193 5' -63.2 NC_004680.1 + 20291 0.69 0.24708
Target:  5'- gGugGgCGGCACUGUUCGC-CCGUUGa -3'
miRNA:   3'- gCugCgGCUGUGGCGGGCGcGGCAGC- -5'
18193 5' -63.2 NC_004680.1 + 36516 0.78 0.055113
Target:  5'- aGAuguuCGCCGACACCGCUCGCaagcucgucGCUGUCGa -3'
miRNA:   3'- gCU----GCGGCUGUGGCGGGCG---------CGGCAGC- -5'
18193 5' -63.2 NC_004680.1 + 45529 0.73 0.142776
Target:  5'- gCGACGCCagacGCGCCGCCCuCGCauuCGUCa -3'
miRNA:   3'- -GCUGCGGc---UGUGGCGGGcGCG---GCAGc -5'
18193 5' -63.2 NC_004680.1 + 38764 0.7 0.203287
Target:  5'- cCGGCGCgGGCAugguucccCCGCCCcccGCGCCGg-- -3'
miRNA:   3'- -GCUGCGgCUGU--------GGCGGG---CGCGGCagc -5'
18193 5' -63.2 NC_004680.1 + 27387 0.7 0.208369
Target:  5'- -uGCGUCGACACCGaCCGUGCUGcCu -3'
miRNA:   3'- gcUGCGGCUGUGGCgGGCGCGGCaGc -5'
18193 5' -63.2 NC_004680.1 + 46078 0.7 0.218863
Target:  5'- --cCGCCGACACCacGCCCuCGCCGa-- -3'
miRNA:   3'- gcuGCGGCUGUGG--CGGGcGCGGCagc -5'
18193 5' -63.2 NC_004680.1 + 28189 0.69 0.235447
Target:  5'- cCGGuCGUgGACACCcgGCCCGUGCUGaUCa -3'
miRNA:   3'- -GCU-GCGgCUGUGG--CGGGCGCGGC-AGc -5'
18193 5' -63.2 NC_004680.1 + 9849 0.69 0.241205
Target:  5'- uGGCGCgGugGCUGgCCGCG-CGUUGg -3'
miRNA:   3'- gCUGCGgCugUGGCgGGCGCgGCAGC- -5'
18193 5' -63.2 NC_004680.1 + 19166 0.69 0.241205
Target:  5'- aCGuCGCCGGaua-GCCCGcCGUCGUCGa -3'
miRNA:   3'- -GCuGCGGCUguggCGGGC-GCGGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.