miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18193 5' -63.2 NC_004680.1 + 743 0.68 0.278244
Target:  5'- -cGCGUgGGCACCGUuuGgcugGCCGUCGg -3'
miRNA:   3'- gcUGCGgCUGUGGCGggCg---CGGCAGC- -5'
18193 5' -63.2 NC_004680.1 + 852 0.69 0.259185
Target:  5'- uCGACGCCaGC-CCGCUCGaacCGCCGaCGg -3'
miRNA:   3'- -GCUGCGGcUGuGGCGGGC---GCGGCaGC- -5'
18193 5' -63.2 NC_004680.1 + 4207 0.69 0.250662
Target:  5'- gCGuuCGCgGACAUCGCagaccgcggcggaCGCGCCGUUGa -3'
miRNA:   3'- -GCu-GCGgCUGUGGCGg------------GCGCGGCAGC- -5'
18193 5' -63.2 NC_004680.1 + 4949 0.71 0.170649
Target:  5'- cCGACGUCGGCACgGCCgaCGaUGCCGUUu -3'
miRNA:   3'- -GCUGCGGCUGUGgCGG--GC-GCGGCAGc -5'
18193 5' -63.2 NC_004680.1 + 6613 0.67 0.327016
Target:  5'- uCGAUGuuGACcuguacuuGCCGCCCGguuCGCCGg-- -3'
miRNA:   3'- -GCUGCggCUG--------UGGCGGGC---GCGGCagc -5'
18193 5' -63.2 NC_004680.1 + 8795 0.66 0.381841
Target:  5'- cCGGCGgaGAC-CCGuCCCgGCGCgGUCa -3'
miRNA:   3'- -GCUGCggCUGuGGC-GGG-CGCGgCAGc -5'
18193 5' -63.2 NC_004680.1 + 9849 0.69 0.241205
Target:  5'- uGGCGCgGugGCUGgCCGCG-CGUUGg -3'
miRNA:   3'- gCUGCGgCugUGGCgGGCGCgGCAGC- -5'
18193 5' -63.2 NC_004680.1 + 10092 0.68 0.291561
Target:  5'- gCGACGUCGAUGCCgGCCCGa-CCGgUCc -3'
miRNA:   3'- -GCUGCGGCUGUGG-CGGGCgcGGC-AGc -5'
18193 5' -63.2 NC_004680.1 + 11170 0.68 0.27177
Target:  5'- gGGCGCCGGgGCCGCCaccaaG-GCCGccCGg -3'
miRNA:   3'- gCUGCGGCUgUGGCGGg----CgCGGCa-GC- -5'
18193 5' -63.2 NC_004680.1 + 11601 0.68 0.30537
Target:  5'- uGGCGCCGAU-CUGCCCcaaauccuugGCauGCUGUCGg -3'
miRNA:   3'- gCUGCGGCUGuGGCGGG----------CG--CGGCAGC- -5'
18193 5' -63.2 NC_004680.1 + 12680 0.67 0.326276
Target:  5'- uGcCGCCGgccuGCACCGCcauuccgagcgcaCCGcCGCCGUCc -3'
miRNA:   3'- gCuGCGGC----UGUGGCG-------------GGC-GCGGCAGc -5'
18193 5' -63.2 NC_004680.1 + 13963 0.72 0.166388
Target:  5'- gGAUGCCGuuACCGUCCcaguCGCCGUUGc -3'
miRNA:   3'- gCUGCGGCugUGGCGGGc---GCGGCAGC- -5'
18193 5' -63.2 NC_004680.1 + 16361 0.66 0.364765
Target:  5'- -cACGCCccaacgcauacugGGCACCGUugcggaacugcaCCGuCGCCGUCGu -3'
miRNA:   3'- gcUGCGG-------------CUGUGGCG------------GGC-GCGGCAGC- -5'
18193 5' -63.2 NC_004680.1 + 16763 0.66 0.398592
Target:  5'- -aACaCCGAUACCGCCCuGCgGCCG-Ca -3'
miRNA:   3'- gcUGcGGCUGUGGCGGG-CG-CGGCaGc -5'
18193 5' -63.2 NC_004680.1 + 16788 0.68 0.278244
Target:  5'- aCGAC-CCGACACCGgCggaaGCGUCGUUc -3'
miRNA:   3'- -GCUGcGGCUGUGGCgGg---CGCGGCAGc -5'
18193 5' -63.2 NC_004680.1 + 17878 0.67 0.357611
Target:  5'- aGACGCCGAacauuCUGCCUGCcCCGa-- -3'
miRNA:   3'- gCUGCGGCUgu---GGCGGGCGcGGCagc -5'
18193 5' -63.2 NC_004680.1 + 19166 0.69 0.241205
Target:  5'- aCGuCGCCGGaua-GCCCGcCGUCGUCGa -3'
miRNA:   3'- -GCuGCGGCUguggCGGGC-GCGGCAGC- -5'
18193 5' -63.2 NC_004680.1 + 19830 0.68 0.278244
Target:  5'- aCGACGCCaACG-CGCCCuuacCGCCGUUa -3'
miRNA:   3'- -GCUGCGGcUGUgGCGGGc---GCGGCAGc -5'
18193 5' -63.2 NC_004680.1 + 20291 0.69 0.24708
Target:  5'- gGugGgCGGCACUGUUCGC-CCGUUGa -3'
miRNA:   3'- gCugCgGCUGUGGCGGGCGcGGCAGC- -5'
18193 5' -63.2 NC_004680.1 + 20748 0.67 0.357611
Target:  5'- uGGcCGCCGAucgggccuguucCGCCGCCaGCGUCGaUCGc -3'
miRNA:   3'- gCU-GCGGCU------------GUGGCGGgCGCGGC-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.