Results 1 - 20 of 37 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18213 | 3' | -62.1 | NC_004680.1 | + | 18865 | 0.66 | 0.414774 |
Target: 5'- uCGGCUacGGCGUGGCGGGga-UCACCg -3' miRNA: 3'- uGCCGA--CUGCGUCGCCCggcAGUGGg -5' |
|||||||
18213 | 3' | -62.1 | NC_004680.1 | + | 36106 | 0.66 | 0.405937 |
Target: 5'- uGCGGCgaaACGCGcGCGuGGCC-UCGgCCg -3' miRNA: 3'- -UGCCGac-UGCGU-CGC-CCGGcAGUgGG- -5' |
|||||||
18213 | 3' | -62.1 | NC_004680.1 | + | 22782 | 0.66 | 0.402435 |
Target: 5'- gGCGGUggcguucagguagGAgGCGGCGacGGCCccCACCCa -3' miRNA: 3'- -UGCCGa------------CUgCGUCGC--CCGGcaGUGGG- -5' |
|||||||
18213 | 3' | -62.1 | NC_004680.1 | + | 56053 | 0.66 | 0.391189 |
Target: 5'- uGCGGCUGggcagcguuggaucgGCGUAGUucgagucGGGCgcgugcugCGUCAUCCa -3' miRNA: 3'- -UGCCGAC---------------UGCGUCG-------CCCG--------GCAGUGGG- -5' |
|||||||
18213 | 3' | -62.1 | NC_004680.1 | + | 46361 | 0.66 | 0.3718 |
Target: 5'- gACGGCccgGGCGguGCuGGuaacaCCGUgACCCc -3' miRNA: 3'- -UGCCGa--CUGCguCGcCC-----GGCAgUGGG- -5' |
|||||||
18213 | 3' | -62.1 | NC_004680.1 | + | 11124 | 0.67 | 0.363577 |
Target: 5'- gACGGCgggagacaucGACGgGGCcgggGGGCCGgcugGCCCg -3' miRNA: 3'- -UGCCGa---------CUGCgUCG----CCCGGCag--UGGG- -5' |
|||||||
18213 | 3' | -62.1 | NC_004680.1 | + | 45945 | 0.67 | 0.363577 |
Target: 5'- cCGGUgacGAUGUAGUGGGgccaCGUC-CCCg -3' miRNA: 3'- uGCCGa--CUGCGUCGCCCg---GCAGuGGG- -5' |
|||||||
18213 | 3' | -62.1 | NC_004680.1 | + | 31574 | 0.67 | 0.35548 |
Target: 5'- -aGGCcGACGUGcGCaGGaGCCGUCACUa -3' miRNA: 3'- ugCCGaCUGCGU-CG-CC-CGGCAGUGGg -5' |
|||||||
18213 | 3' | -62.1 | NC_004680.1 | + | 34282 | 0.67 | 0.354678 |
Target: 5'- cCGGCagGGCGCuuuuuugcguucuGGCGGG-UGUCACuCCg -3' miRNA: 3'- uGCCGa-CUGCG-------------UCGCCCgGCAGUG-GG- -5' |
|||||||
18213 | 3' | -62.1 | NC_004680.1 | + | 5602 | 0.67 | 0.347512 |
Target: 5'- cCGGC-GACGCugcuggucuGCGGGCgGgCACCa -3' miRNA: 3'- uGCCGaCUGCGu--------CGCCCGgCaGUGGg -5' |
|||||||
18213 | 3' | -62.1 | NC_004680.1 | + | 12449 | 0.67 | 0.347512 |
Target: 5'- cCGGUgGugGCGGCGGcccgauggcuGCCGgugCGCCa -3' miRNA: 3'- uGCCGaCugCGUCGCC----------CGGCa--GUGGg -5' |
|||||||
18213 | 3' | -62.1 | NC_004680.1 | + | 38808 | 0.67 | 0.342792 |
Target: 5'- aACGGCUGGgacgaacugcacaaGCAGguaGGGCCGaacUCGCCa -3' miRNA: 3'- -UGCCGACUg-------------CGUCg--CCCGGC---AGUGGg -5' |
|||||||
18213 | 3' | -62.1 | NC_004680.1 | + | 26759 | 0.67 | 0.331961 |
Target: 5'- cGCGGgUG-CGUAGCGGGCCuUCggggcggaACCa -3' miRNA: 3'- -UGCCgACuGCGUCGCCCGGcAG--------UGGg -5' |
|||||||
18213 | 3' | -62.1 | NC_004680.1 | + | 23519 | 0.67 | 0.331961 |
Target: 5'- gGCGGcCUGcACGauCAGCGuGCCGUCACg- -3' miRNA: 3'- -UGCC-GAC-UGC--GUCGCcCGGCAGUGgg -5' |
|||||||
18213 | 3' | -62.1 | NC_004680.1 | + | 12511 | 0.68 | 0.302413 |
Target: 5'- cCGGUgGugGgCAGCgGGGCUGgguuaggCGCCCa -3' miRNA: 3'- uGCCGaCugC-GUCG-CCCGGCa------GUGGG- -5' |
|||||||
18213 | 3' | -62.1 | NC_004680.1 | + | 28340 | 0.68 | 0.295349 |
Target: 5'- gACGGCgcgGGCGguGUcggcgucgGGGCCGaucCACCa -3' miRNA: 3'- -UGCCGa--CUGCguCG--------CCCGGCa--GUGGg -5' |
|||||||
18213 | 3' | -62.1 | NC_004680.1 | + | 4936 | 0.68 | 0.295349 |
Target: 5'- cCGGCUGA-GUAuGCGGcGCUGcCGCCUg -3' miRNA: 3'- uGCCGACUgCGU-CGCC-CGGCaGUGGG- -5' |
|||||||
18213 | 3' | -62.1 | NC_004680.1 | + | 5448 | 0.68 | 0.288415 |
Target: 5'- uCGGUgucgGugGCca-GGGCCGUggCACCCg -3' miRNA: 3'- uGCCGa---CugCGucgCCCGGCA--GUGGG- -5' |
|||||||
18213 | 3' | -62.1 | NC_004680.1 | + | 40135 | 0.68 | 0.28161 |
Target: 5'- uUGGUUGuguguuucCGguGUuaGGGCCGUCGCCUc -3' miRNA: 3'- uGCCGACu-------GCguCG--CCCGGCAGUGGG- -5' |
|||||||
18213 | 3' | -62.1 | NC_004680.1 | + | 56751 | 0.69 | 0.274932 |
Target: 5'- gGCGGgccaCUGAUGUGGCGGGgaCGUCGCa- -3' miRNA: 3'- -UGCC----GACUGCGUCGCCCg-GCAGUGgg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home