miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18231 3' -62.8 NC_004680.1 + 30113 0.66 0.354129
Target:  5'- gCGCCGCAGGaaccGuUUGCGuCCaccuuugucccauucGGCGAGCUGg -3'
miRNA:   3'- -GCGGCGUCU----C-GACGC-GG---------------CCGUUCGGC- -5'
18231 3' -62.8 NC_004680.1 + 21257 0.66 0.350917
Target:  5'- uCGUCGgcCGGGGCUgGUGUCGGUAGcGCCa -3'
miRNA:   3'- -GCGGC--GUCUCGA-CGCGGCCGUU-CGGc -5'
18231 3' -62.8 NC_004680.1 + 34122 0.66 0.350917
Target:  5'- uGCCGC-GAGUUGUGCggCGGCAacgacucgguuGGaCCGa -3'
miRNA:   3'- gCGGCGuCUCGACGCG--GCCGU-----------UC-GGC- -5'
18231 3' -62.8 NC_004680.1 + 52960 0.66 0.342979
Target:  5'- cCGCCGCGaGGCUGUaCCugGGCA-GCCu -3'
miRNA:   3'- -GCGGCGUcUCGACGcGG--CCGUuCGGc -5'
18231 3' -62.8 NC_004680.1 + 50509 0.66 0.335172
Target:  5'- aGuCCGUAGGGgUGUagaGCC-GCGGGCCGg -3'
miRNA:   3'- gC-GGCGUCUCgACG---CGGcCGUUCGGC- -5'
18231 3' -62.8 NC_004680.1 + 19127 0.66 0.335172
Target:  5'- aCGUCGCAGAuugUGuCGCUGGC-GGCCa -3'
miRNA:   3'- -GCGGCGUCUcg-AC-GCGGCCGuUCGGc -5'
18231 3' -62.8 NC_004680.1 + 8875 0.66 0.327495
Target:  5'- gCGCCGgGacGGGuCUcCGCCGGCAGGaCCa -3'
miRNA:   3'- -GCGGCgU--CUC-GAcGCGGCCGUUC-GGc -5'
18231 3' -62.8 NC_004680.1 + 11103 0.66 0.327495
Target:  5'- gGCCGgGGGGCcG-GCUGGCccgauggggAGGCCGg -3'
miRNA:   3'- gCGGCgUCUCGaCgCGGCCG---------UUCGGC- -5'
18231 3' -62.8 NC_004680.1 + 44870 0.66 0.327495
Target:  5'- gGUgGCGGAGUaccgaaaacaaGCGCUGGCG-GCCGa -3'
miRNA:   3'- gCGgCGUCUCGa----------CGCGGCCGUuCGGC- -5'
18231 3' -62.8 NC_004680.1 + 25911 0.67 0.319949
Target:  5'- uCGCCGUGGuGGCgGcCGCCGccGCAGuGCCGa -3'
miRNA:   3'- -GCGGCGUC-UCGaC-GCGGC--CGUU-CGGC- -5'
18231 3' -62.8 NC_004680.1 + 42726 0.67 0.312534
Target:  5'- gCGCCGCaAGuuccccggucguGGCUGggacCGCCGGCAGugcGCUGa -3'
miRNA:   3'- -GCGGCG-UC------------UCGAC----GCGGCCGUU---CGGC- -5'
18231 3' -62.8 NC_004680.1 + 56143 0.67 0.312534
Target:  5'- uCGCCGCAGucuggGCaGUCGGCGucGCCGc -3'
miRNA:   3'- -GCGGCGUCucga-CG-CGGCCGUu-CGGC- -5'
18231 3' -62.8 NC_004680.1 + 30745 0.67 0.30525
Target:  5'- --gCGCAGGGCgacgGCUGGCAGGUCGc -3'
miRNA:   3'- gcgGCGUCUCGacg-CGGCCGUUCGGC- -5'
18231 3' -62.8 NC_004680.1 + 51572 0.67 0.291074
Target:  5'- uCGCCGCAGaAGUaugUGCGCUccuCGGGCCa -3'
miRNA:   3'- -GCGGCGUC-UCG---ACGCGGcc-GUUCGGc -5'
18231 3' -62.8 NC_004680.1 + 25727 0.67 0.284182
Target:  5'- uGUCGCAGuguuuggguGCgGCGUCGGCGAcggcggggauGCCGa -3'
miRNA:   3'- gCGGCGUCu--------CGaCGCGGCCGUU----------CGGC- -5'
18231 3' -62.8 NC_004680.1 + 59172 0.67 0.27742
Target:  5'- uCGCCGguGuugGGUUGUGCuUGGC-GGCCGc -3'
miRNA:   3'- -GCGGCguC---UCGACGCG-GCCGuUCGGC- -5'
18231 3' -62.8 NC_004680.1 + 33570 0.67 0.27742
Target:  5'- cCGCCGUGGGGaacuccucggcCUGCGCUGGCccuacGUCGa -3'
miRNA:   3'- -GCGGCGUCUC-----------GACGCGGCCGuu---CGGC- -5'
18231 3' -62.8 NC_004680.1 + 36415 0.67 0.27742
Target:  5'- uGCCGCGGcGCagaccuacuuUGCGgucaagacCCGGCAAGCgGa -3'
miRNA:   3'- gCGGCGUCuCG----------ACGC--------GGCCGUUCGgC- -5'
18231 3' -62.8 NC_004680.1 + 56788 0.68 0.270786
Target:  5'- uGCCGguaggcguUGGGGCUGUGCUcuuuggcguacuGGCGGGCCa -3'
miRNA:   3'- gCGGC--------GUCUCGACGCGG------------CCGUUCGGc -5'
18231 3' -62.8 NC_004680.1 + 1814 0.68 0.270786
Target:  5'- -uCCGUGGGGCUGggauucgacgauCGCCgcgugGGCGGGCCGg -3'
miRNA:   3'- gcGGCGUCUCGAC------------GCGG-----CCGUUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.