miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18239 5' -53.8 NC_004680.1 + 56000 1.13 0.000958
Target:  5'- aCCGGCACCGAGAACGCAAAACCGGACg -3'
miRNA:   3'- -GGCCGUGGCUCUUGCGUUUUGGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 12948 0.78 0.222388
Target:  5'- gCGaGcCACCGAGGACGgAAcaGGCCGGACg -3'
miRNA:   3'- gGC-C-GUGGCUCUUGCgUU--UUGGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 23391 0.78 0.222388
Target:  5'- gCGGCgucACCGAGAugcuCGCccccGAACCGGACa -3'
miRNA:   3'- gGCCG---UGGCUCUu---GCGu---UUUGGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 23718 0.76 0.287379
Target:  5'- aCGGUAUCGAagGGGCGCAugagGGGCUGGACg -3'
miRNA:   3'- gGCCGUGGCU--CUUGCGU----UUUGGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 7621 0.76 0.309595
Target:  5'- aCCGGCACCGAcugGAGCGCc--GgCGGAUu -3'
miRNA:   3'- -GGCCGUGGCU---CUUGCGuuuUgGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 37882 0.76 0.309595
Target:  5'- aCCGGCaugacugccGCCGAGGAUGCGu-ACCGG-Cg -3'
miRNA:   3'- -GGCCG---------UGGCUCUUGCGUuuUGGCCuG- -5'
18239 5' -53.8 NC_004680.1 + 15190 0.75 0.333095
Target:  5'- aCCGGCACCGcuGAacuGCGCGGuauCCGcGACa -3'
miRNA:   3'- -GGCCGUGGCu-CU---UGCGUUuu-GGC-CUG- -5'
18239 5' -53.8 NC_004680.1 + 12643 0.74 0.401973
Target:  5'- cCCGGCGCUGgucAGGccGCGCA-GACCGGGg -3'
miRNA:   3'- -GGCCGUGGC---UCU--UGCGUuUUGGCCUg -5'
18239 5' -53.8 NC_004680.1 + 38858 0.73 0.420551
Target:  5'- cCCGGCGCgGGGGGCGgGGGaaccaugcccgcGCCGGGa -3'
miRNA:   3'- -GGCCGUGgCUCUUGCgUUU------------UGGCCUg -5'
18239 5' -53.8 NC_004680.1 + 16253 0.73 0.424329
Target:  5'- aCGGCGCCGAGGcUGuCGGAuagaaccgcucaaucGCCGGAUg -3'
miRNA:   3'- gGCCGUGGCUCUuGC-GUUU---------------UGGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 14096 0.73 0.430033
Target:  5'- aCCGGCACCGGuaguGAACuCGGc-CCGGACu -3'
miRNA:   3'- -GGCCGUGGCU----CUUGcGUUuuGGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 26228 0.73 0.449367
Target:  5'- aCGaGUAgCGGGGGCGauCGGAACCGGACu -3'
miRNA:   3'- gGC-CGUgGCUCUUGC--GUUUUGGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 33300 0.72 0.489412
Target:  5'- cCCGGUagucGuuGAGGACGCcGGGgCGGACu -3'
miRNA:   3'- -GGCCG----UggCUCUUGCGuUUUgGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 49647 0.72 0.499684
Target:  5'- gCUGGuCGCCGAGGuugaGCGucuCCGGGCg -3'
miRNA:   3'- -GGCC-GUGGCUCUug--CGUuuuGGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 55438 0.71 0.519457
Target:  5'- gCCGGCGaguuCCGGGGggacacugaugguGCGCAGc-CCGGGCa -3'
miRNA:   3'- -GGCCGU----GGCUCU-------------UGCGUUuuGGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 24299 0.71 0.529988
Target:  5'- gCCGGUGCCGGGAaggguggugcccAuccacaugccgguCGCGGuGCCGGACu -3'
miRNA:   3'- -GGCCGUGGCUCU------------U-------------GCGUUuUGGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 14965 0.71 0.529988
Target:  5'- uUGGCACCGAuGGGCGCGGuugguggcgauuuGAUCGaGGCg -3'
miRNA:   3'- gGCCGUGGCU-CUUGCGUU-------------UUGGC-CUG- -5'
18239 5' -53.8 NC_004680.1 + 51141 0.71 0.531046
Target:  5'- aCCGGCugCGGG---GCAAAGCUgaGGGCg -3'
miRNA:   3'- -GGCCGugGCUCuugCGUUUUGG--CCUG- -5'
18239 5' -53.8 NC_004680.1 + 19348 0.71 0.535283
Target:  5'- cCCGGUugCGgucgguggcggugguGGugguGCGCAGGGCUGGGCc -3'
miRNA:   3'- -GGCCGugGC---------------UCu---UGCGUUUUGGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 10609 0.71 0.552346
Target:  5'- uCCGGgaugcCGCUGAGAcuGCGCAGGACCuguGGAa -3'
miRNA:   3'- -GGCC-----GUGGCUCU--UGCGUUUUGG---CCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.