miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18239 5' -53.8 NC_004680.1 + 1662 0.67 0.777401
Target:  5'- gUGGuCACUGAGAuUGCGAcgGGCCGG-Ca -3'
miRNA:   3'- gGCC-GUGGCUCUuGCGUU--UUGGCCuG- -5'
18239 5' -53.8 NC_004680.1 + 2783 0.66 0.841137
Target:  5'- cUCGGCAUCGAGGucccgccaccacCGCAu-AgCGGACc -3'
miRNA:   3'- -GGCCGUGGCUCUu-----------GCGUuuUgGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 2868 0.71 0.552346
Target:  5'- gCCuGCGCCGGGAcgacgacuGCaCAAAGCaCGGACg -3'
miRNA:   3'- -GGcCGUGGCUCU--------UGcGUUUUG-GCCUG- -5'
18239 5' -53.8 NC_004680.1 + 5224 0.66 0.842874
Target:  5'- gCCGGCAgaccUCGGcGGACGCGAuuuccgacACCGG-Cg -3'
miRNA:   3'- -GGCCGU----GGCU-CUUGCGUUu-------UGGCCuG- -5'
18239 5' -53.8 NC_004680.1 + 5518 0.7 0.628451
Target:  5'- aUCaGCAuCCGAGGGaGCAGAACCGGuaaGCg -3'
miRNA:   3'- -GGcCGU-GGCUCUUgCGUUUUGGCC---UG- -5'
18239 5' -53.8 NC_004680.1 + 5920 0.68 0.73648
Target:  5'- gCCGaGCGCCGc-AGCGCucacACCGGAg -3'
miRNA:   3'- -GGC-CGUGGCucUUGCGuuu-UGGCCUg -5'
18239 5' -53.8 NC_004680.1 + 6733 0.69 0.65036
Target:  5'- -gGGCGCCGGGuuugGugGCGGAGCugCGGAa -3'
miRNA:   3'- ggCCGUGGCUC----UugCGUUUUG--GCCUg -5'
18239 5' -53.8 NC_004680.1 + 7621 0.76 0.309595
Target:  5'- aCCGGCACCGAcugGAGCGCc--GgCGGAUu -3'
miRNA:   3'- -GGCCGUGGCU---CUUGCGuuuUgGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 8197 0.68 0.704658
Target:  5'- aCC-GCGCUGAGggUuacccggcgGUGAAGCUGGACg -3'
miRNA:   3'- -GGcCGUGGCUCuuG---------CGUUUUGGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 8775 0.69 0.672203
Target:  5'- aCGGCAaCGAGAugGUccuGCCGG-Cg -3'
miRNA:   3'- gGCCGUgGCUCUugCGuuuUGGCCuG- -5'
18239 5' -53.8 NC_004680.1 + 10017 0.68 0.725962
Target:  5'- gCCGGCAUCGAcguCGCu--GCCGuGAUg -3'
miRNA:   3'- -GGCCGUGGCUcuuGCGuuuUGGC-CUG- -5'
18239 5' -53.8 NC_004680.1 + 10609 0.71 0.552346
Target:  5'- uCCGGgaugcCGCUGAGAcuGCGCAGGACCuguGGAa -3'
miRNA:   3'- -GGCC-----GUGGCUCU--UGCGUUUUGG---CCUg -5'
18239 5' -53.8 NC_004680.1 + 11102 0.68 0.725962
Target:  5'- cCCGGCGCCcaagcAGAACGCcgcGGCCGuuCg -3'
miRNA:   3'- -GGCCGUGGc----UCUUGCGuu-UUGGCcuG- -5'
18239 5' -53.8 NC_004680.1 + 11170 0.68 0.715351
Target:  5'- -gGGCGCCGGGGcCGCcaccAAGGCCGcccGGCa -3'
miRNA:   3'- ggCCGUGGCUCUuGCG----UUUUGGC---CUG- -5'
18239 5' -53.8 NC_004680.1 + 11442 0.69 0.639409
Target:  5'- -aGGcCGCCGAGAuGCGCAugucggauGCgCGGGCg -3'
miRNA:   3'- ggCC-GUGGCUCU-UGCGUuu------UG-GCCUG- -5'
18239 5' -53.8 NC_004680.1 + 12259 0.69 0.649266
Target:  5'- aCCGcCACCGucGGAACggauaccugggcgGCAGcGCCGGACg -3'
miRNA:   3'- -GGCcGUGGC--UCUUG-------------CGUUuUGGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 12302 0.67 0.766356
Target:  5'- aCCGGaaccgcuCGCgGGGAACGCu--GCCgcGGACg -3'
miRNA:   3'- -GGCC-------GUGgCUCUUGCGuuuUGG--CCUG- -5'
18239 5' -53.8 NC_004680.1 + 12503 0.69 0.664571
Target:  5'- -gGGCAgCGGGGcuggguuaggcgcccACGCAccagacgacaccgGAGCCGGACc -3'
miRNA:   3'- ggCCGUgGCUCU---------------UGCGU-------------UUUGGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 12643 0.74 0.401973
Target:  5'- cCCGGCGCUGgucAGGccGCGCA-GACCGGGg -3'
miRNA:   3'- -GGCCGUGGC---UCU--UGCGUuUUGGCCUg -5'
18239 5' -53.8 NC_004680.1 + 12948 0.78 0.222388
Target:  5'- gCGaGcCACCGAGGACGgAAcaGGCCGGACg -3'
miRNA:   3'- gGC-C-GUGGCUCUUGCgUU--UUGGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.