miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18239 5' -53.8 NC_004680.1 + 57169 0.69 0.672203
Target:  5'- cCCGGCgccGCCGAGAACGCccacGAGCa-GAa -3'
miRNA:   3'- -GGCCG---UGGCUCUUGCGu---UUUGgcCUg -5'
18239 5' -53.8 NC_004680.1 + 19348 0.71 0.535283
Target:  5'- cCCGGUugCGgucgguggcggugguGGugguGCGCAGGGCUGGGCc -3'
miRNA:   3'- -GGCCGugGC---------------UCu---UGCGUUUUGGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 10609 0.71 0.552346
Target:  5'- uCCGGgaugcCGCUGAGAcuGCGCAGGACCuguGGAa -3'
miRNA:   3'- -GGCC-----GUGGCUCU--UGCGUUUUGG---CCUg -5'
18239 5' -53.8 NC_004680.1 + 13897 0.7 0.595636
Target:  5'- aCGGCAUCcgcauGAGggUGCAGggcAACUGGAUc -3'
miRNA:   3'- gGCCGUGG-----CUCuuGCGUU---UUGGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 57947 0.7 0.628451
Target:  5'- cCCGaGCGgauaCGAGAACuCAccGCCGGACg -3'
miRNA:   3'- -GGC-CGUg---GCUCUUGcGUuuUGGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 11442 0.69 0.639409
Target:  5'- -aGGcCGCCGAGAuGCGCAugucggauGCgCGGGCg -3'
miRNA:   3'- ggCC-GUGGCUCU-UGCGUuu------UG-GCCUG- -5'
18239 5' -53.8 NC_004680.1 + 42094 0.69 0.639409
Target:  5'- gCCgGGCGCaGAGGugggGCGCAuGACCGGcCg -3'
miRNA:   3'- -GG-CCGUGgCUCU----UGCGUuUUGGCCuG- -5'
18239 5' -53.8 NC_004680.1 + 6733 0.69 0.65036
Target:  5'- -gGGCGCCGGGuuugGugGCGGAGCugCGGAa -3'
miRNA:   3'- ggCCGUGGCUC----UugCGUUUUG--GCCUg -5'
18239 5' -53.8 NC_004680.1 + 52115 0.69 0.65036
Target:  5'- aCUGGaUACCGAGGgggaaGCGUGAcccGGCCGGAa -3'
miRNA:   3'- -GGCC-GUGGCUCU-----UGCGUU---UUGGCCUg -5'
18239 5' -53.8 NC_004680.1 + 51141 0.71 0.531046
Target:  5'- aCCGGCugCGGG---GCAAAGCUgaGGGCg -3'
miRNA:   3'- -GGCCGugGCUCuugCGUUUUGG--CCUG- -5'
18239 5' -53.8 NC_004680.1 + 14965 0.71 0.529988
Target:  5'- uUGGCACCGAuGGGCGCGGuugguggcgauuuGAUCGaGGCg -3'
miRNA:   3'- gGCCGUGGCU-CUUGCGUU-------------UUGGC-CUG- -5'
18239 5' -53.8 NC_004680.1 + 49647 0.72 0.499684
Target:  5'- gCUGGuCGCCGAGGuugaGCGucuCCGGGCg -3'
miRNA:   3'- -GGCC-GUGGCUCUug--CGUuuuGGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 12948 0.78 0.222388
Target:  5'- gCGaGcCACCGAGGACGgAAcaGGCCGGACg -3'
miRNA:   3'- gGC-C-GUGGCUCUUGCgUU--UUGGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 23718 0.76 0.287379
Target:  5'- aCGGUAUCGAagGGGCGCAugagGGGCUGGACg -3'
miRNA:   3'- gGCCGUGGCU--CUUGCGU----UUUGGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 7621 0.76 0.309595
Target:  5'- aCCGGCACCGAcugGAGCGCc--GgCGGAUu -3'
miRNA:   3'- -GGCCGUGGCU---CUUGCGuuuUgGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 37882 0.76 0.309595
Target:  5'- aCCGGCaugacugccGCCGAGGAUGCGu-ACCGG-Cg -3'
miRNA:   3'- -GGCCG---------UGGCUCUUGCGUuuUGGCCuG- -5'
18239 5' -53.8 NC_004680.1 + 15190 0.75 0.333095
Target:  5'- aCCGGCACCGcuGAacuGCGCGGuauCCGcGACa -3'
miRNA:   3'- -GGCCGUGGCu-CU---UGCGUUuu-GGC-CUG- -5'
18239 5' -53.8 NC_004680.1 + 12643 0.74 0.401973
Target:  5'- cCCGGCGCUGgucAGGccGCGCA-GACCGGGg -3'
miRNA:   3'- -GGCCGUGGC---UCU--UGCGUuUUGGCCUg -5'
18239 5' -53.8 NC_004680.1 + 14096 0.73 0.430033
Target:  5'- aCCGGCACCGGuaguGAACuCGGc-CCGGACu -3'
miRNA:   3'- -GGCCGUGGCU----CUUGcGUUuuGGCCUG- -5'
18239 5' -53.8 NC_004680.1 + 26228 0.73 0.449367
Target:  5'- aCGaGUAgCGGGGGCGauCGGAACCGGACu -3'
miRNA:   3'- gGC-CGUgGCUCUUGC--GUUUUGGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.