miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18244 5' -55.6 NC_004680.1 + 30836 0.66 0.725743
Target:  5'- cGUAGUgcgCGACCuGcCAGcCGUCGcCCUGCGc -3'
miRNA:   3'- -CGUCAa--GUUGG-C-GUC-GCGGC-GGAUGU- -5'
18244 5' -55.6 NC_004680.1 + 5681 0.66 0.715084
Target:  5'- cGCAG----ACCaGCAGCGUCGCCg--- -3'
miRNA:   3'- -CGUCaaguUGG-CGUCGCGGCGGaugu -5'
18244 5' -55.6 NC_004680.1 + 26180 0.66 0.704343
Target:  5'- gGC-GUUcCAGCCgGCGGgGCCGCgggaCUGCAc -3'
miRNA:   3'- -CGuCAA-GUUGG-CGUCgCGGCG----GAUGU- -5'
18244 5' -55.6 NC_004680.1 + 6387 0.66 0.704343
Target:  5'- aCGGcccuGCCGuCAGCGauaCCGCCUGCGa -3'
miRNA:   3'- cGUCaaguUGGC-GUCGC---GGCGGAUGU- -5'
18244 5' -55.6 NC_004680.1 + 27800 0.66 0.704343
Target:  5'- gGCGGUUCAgguucggucuuGCCGCca-GCCGCCc--- -3'
miRNA:   3'- -CGUCAAGU-----------UGGCGucgCGGCGGaugu -5'
18244 5' -55.6 NC_004680.1 + 36411 0.66 0.693532
Target:  5'- -aGGUU--GCCGCGGCGCaGaCCUACu -3'
miRNA:   3'- cgUCAAguUGGCGUCGCGgC-GGAUGu -5'
18244 5' -55.6 NC_004680.1 + 26090 0.66 0.693532
Target:  5'- uGCAGUc---CCGCGGCcCCGCCgGCu -3'
miRNA:   3'- -CGUCAaguuGGCGUCGcGGCGGaUGu -5'
18244 5' -55.6 NC_004680.1 + 15268 0.66 0.682662
Target:  5'- cGCAGUUCAGCgGUGccgguccauGCGCUGUC-ACGg -3'
miRNA:   3'- -CGUCAAGUUGgCGU---------CGCGGCGGaUGU- -5'
18244 5' -55.6 NC_004680.1 + 59235 0.66 0.682662
Target:  5'- cGCAGguugUCGAgUGUgucuGCGCCGCC-GCGu -3'
miRNA:   3'- -CGUCa---AGUUgGCGu---CGCGGCGGaUGU- -5'
18244 5' -55.6 NC_004680.1 + 25901 0.66 0.682662
Target:  5'- gGCGGccgCcGCCGCAGUGCCGaacGCAc -3'
miRNA:   3'- -CGUCaa-GuUGGCGUCGCGGCggaUGU- -5'
18244 5' -55.6 NC_004680.1 + 43720 0.66 0.671743
Target:  5'- uGCAGUUCcugGACCGCgaAGCGCUGgaguugaaCCUGg- -3'
miRNA:   3'- -CGUCAAG---UUGGCG--UCGCGGC--------GGAUgu -5'
18244 5' -55.6 NC_004680.1 + 30611 0.66 0.671743
Target:  5'- cGCAGUUgGugCaGCGGCGCauCGUgUACGu -3'
miRNA:   3'- -CGUCAAgUugG-CGUCGCG--GCGgAUGU- -5'
18244 5' -55.6 NC_004680.1 + 16165 0.67 0.660787
Target:  5'- aGCGGUUCuauccgacAGCCuCGGCGCCGUacaACAu -3'
miRNA:   3'- -CGUCAAG--------UUGGcGUCGCGGCGga-UGU- -5'
18244 5' -55.6 NC_004680.1 + 9084 0.67 0.660787
Target:  5'- gGCGGUUUuucgGGCUG-AGCGUCGCCgauugGCAu -3'
miRNA:   3'- -CGUCAAG----UUGGCgUCGCGGCGGa----UGU- -5'
18244 5' -55.6 NC_004680.1 + 55594 0.67 0.660787
Target:  5'- cGCGGUgccCGGuuGguGCGUCGgCUGCu -3'
miRNA:   3'- -CGUCAa--GUUggCguCGCGGCgGAUGu -5'
18244 5' -55.6 NC_004680.1 + 24707 0.67 0.649805
Target:  5'- uCGGUU--ACCGCAGCcCCGCCgagACc -3'
miRNA:   3'- cGUCAAguUGGCGUCGcGGCGGa--UGu -5'
18244 5' -55.6 NC_004680.1 + 29103 0.67 0.649805
Target:  5'- aGUAGgUCAACCGCGcccGCGCCGagugugGCGa -3'
miRNA:   3'- -CGUCaAGUUGGCGU---CGCGGCgga---UGU- -5'
18244 5' -55.6 NC_004680.1 + 22403 0.67 0.638806
Target:  5'- cGCGGUaauACCGCuccGCGCCGgacauuccaaCCUGCGg -3'
miRNA:   3'- -CGUCAaguUGGCGu--CGCGGC----------GGAUGU- -5'
18244 5' -55.6 NC_004680.1 + 19676 0.67 0.627801
Target:  5'- aGCGGUac--CCGCcGCGCCGCCcucagcgACAa -3'
miRNA:   3'- -CGUCAaguuGGCGuCGCGGCGGa------UGU- -5'
18244 5' -55.6 NC_004680.1 + 25230 0.67 0.627801
Target:  5'- aGCGGUUCGggucACCaGCGGCGCggaguugguacaCGCgCUGCu -3'
miRNA:   3'- -CGUCAAGU----UGG-CGUCGCG------------GCG-GAUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.