miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18245 3' -60.4 NC_004680.1 + 58439 1.06 0.000463
Target:  5'- cAUGGGCACGCCACCAAGGCCACACCAu -3'
miRNA:   3'- -UACCCGUGCGGUGGUUCCGGUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 11163 0.85 0.016954
Target:  5'- -gGGGC-CGCCACCAAGGCCGC-CCGg -3'
miRNA:   3'- uaCCCGuGCGGUGGUUCCGGUGuGGU- -5'
18245 3' -60.4 NC_004680.1 + 12322 0.74 0.131929
Target:  5'- -gGGGCGacCGCCGCUucGGGuGCCGCGCCGg -3'
miRNA:   3'- uaCCCGU--GCGGUGG--UUC-CGGUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 14809 0.73 0.143159
Target:  5'- -gGGGCuuGCCACUccaGGGGCUACAUCGg -3'
miRNA:   3'- uaCCCGugCGGUGG---UUCCGGUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 59002 0.72 0.16383
Target:  5'- -gGGGCAa-CCACCAAGGacgcaaagucCCACACCGc -3'
miRNA:   3'- uaCCCGUgcGGUGGUUCC----------GGUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 22169 0.72 0.168274
Target:  5'- -cGGGUugucguucACGCCGagccugggguUCGAGGCCGCGCCGa -3'
miRNA:   3'- uaCCCG--------UGCGGU----------GGUUCCGGUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 21945 0.72 0.18226
Target:  5'- gGUGGGCAUGgCGCCGuGGCC-CACa- -3'
miRNA:   3'- -UACCCGUGCgGUGGUuCCGGuGUGgu -5'
18245 3' -60.4 NC_004680.1 + 19518 0.71 0.207857
Target:  5'- -cGGGUgacgGCGCCGCCGGuGGUaACACCAc -3'
miRNA:   3'- uaCCCG----UGCGGUGGUU-CCGgUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 53692 0.7 0.224664
Target:  5'- -gGaGGUACGCCuuuguaGCCGGGuuGCCACACCGa -3'
miRNA:   3'- uaC-CCGUGCGG------UGGUUC--CGGUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 42206 0.7 0.2365
Target:  5'- cUGGGC-UGCCACCA---CCGCACCGu -3'
miRNA:   3'- uACCCGuGCGGUGGUuccGGUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 750 0.7 0.242612
Target:  5'- cGUGcGGCcUGCCccgacagugaGCCAGGGCCgaACACCAu -3'
miRNA:   3'- -UAC-CCGuGCGG----------UGGUUCCGG--UGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 17172 0.69 0.282071
Target:  5'- -gGGGC-CGCCaAUCGAacGGCUGCGCCGg -3'
miRNA:   3'- uaCCCGuGCGG-UGGUU--CCGGUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 19592 0.69 0.282071
Target:  5'- -gGcGGCGcCGUCACCcGGGCCaccaACACCAc -3'
miRNA:   3'- uaC-CCGU-GCGGUGGuUCCGG----UGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 28496 0.69 0.282071
Target:  5'- uUGGGaauaGCCAgCCAGGGCaGCGCCGu -3'
miRNA:   3'- uACCCgug-CGGU-GGUUCCGgUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 39825 0.69 0.289122
Target:  5'- -aGGGaGCGCCGCagaGAGcGCCGCACgGa -3'
miRNA:   3'- uaCCCgUGCGGUGg--UUC-CGGUGUGgU- -5'
18245 3' -60.4 NC_004680.1 + 13429 0.68 0.303637
Target:  5'- gGUGGGCAccggucCGCUgguuCCAAGGC-GCACCGc -3'
miRNA:   3'- -UACCCGU------GCGGu---GGUUCCGgUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 12547 0.68 0.303637
Target:  5'- uGUGGcGCACcggcaGCCAUC-GGGCCGcCGCCAc -3'
miRNA:   3'- -UACC-CGUG-----CGGUGGuUCCGGU-GUGGU- -5'
18245 3' -60.4 NC_004680.1 + 25834 0.68 0.318706
Target:  5'- -gGcGGC-CGCCACCAcGGCgAgACCAc -3'
miRNA:   3'- uaC-CCGuGCGGUGGUuCCGgUgUGGU- -5'
18245 3' -60.4 NC_004680.1 + 12919 0.68 0.321787
Target:  5'- cUGGGaagcCugGCCAgCCAGGuucggcaacgcgggaGCCGCACCAg -3'
miRNA:   3'- uACCC----GugCGGU-GGUUC---------------CGGUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 6006 0.68 0.326449
Target:  5'- -cGGGCGgGuguucaCCACCGGGGCCAC-UCGg -3'
miRNA:   3'- uaCCCGUgC------GGUGGUUCCGGUGuGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.