miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18245 3' -60.4 NC_004680.1 + 23493 0.66 0.411389
Target:  5'- -gGGGCAgGCC-CC--GGCCACugUg -3'
miRNA:   3'- uaCCCGUgCGGuGGuuCCGGUGugGu -5'
18245 3' -60.4 NC_004680.1 + 20874 0.67 0.358803
Target:  5'- -cGGGacaACGCCAU--GGGCCuguCACCGg -3'
miRNA:   3'- uaCCCg--UGCGGUGguUCCGGu--GUGGU- -5'
18245 3' -60.4 NC_004680.1 + 13852 0.67 0.3758
Target:  5'- uGUGGGCGCGCau---GGGCCGCGaCAg -3'
miRNA:   3'- -UACCCGUGCGgugguUCCGGUGUgGU- -5'
18245 3' -60.4 NC_004680.1 + 28649 0.67 0.3758
Target:  5'- gGUGGcGCgacuACGCaCACCAAGGCgacuugUACGCCu -3'
miRNA:   3'- -UACC-CG----UGCG-GUGGUUCCG------GUGUGGu -5'
18245 3' -60.4 NC_004680.1 + 40019 0.67 0.384501
Target:  5'- -cGGGC-CGUCACCc---CCACGCCAg -3'
miRNA:   3'- uaCCCGuGCGGUGGuuccGGUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 13142 0.66 0.393333
Target:  5'- gAUGGGCG-GCCuggcgguccccgACCGGaccGCCGCACCAg -3'
miRNA:   3'- -UACCCGUgCGG------------UGGUUc--CGGUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 14156 0.66 0.402297
Target:  5'- -gGuGGCGCGUugauCACUcAGGCgACACCAg -3'
miRNA:   3'- uaC-CCGUGCG----GUGGuUCCGgUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 30684 0.66 0.402297
Target:  5'- cGUGGGUGCGaCugUGAGGCCG-GCCGa -3'
miRNA:   3'- -UACCCGUGCgGugGUUCCGGUgUGGU- -5'
18245 3' -60.4 NC_004680.1 + 39861 0.66 0.402297
Target:  5'- -aGGGaGCGCCGCagaGAGcGCCGCAUgGa -3'
miRNA:   3'- uaCCCgUGCGGUGg--UUC-CGGUGUGgU- -5'
18245 3' -60.4 NC_004680.1 + 36590 0.68 0.329585
Target:  5'- -cGGG-ACGCCccgcugguugcgaagGCUGAGGCgCACACCGg -3'
miRNA:   3'- uaCCCgUGCGG---------------UGGUUCCG-GUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 6006 0.68 0.326449
Target:  5'- -cGGGCGgGuguucaCCACCGGGGCCAC-UCGg -3'
miRNA:   3'- uaCCCGUgC------GGUGGUUCCGGUGuGGU- -5'
18245 3' -60.4 NC_004680.1 + 25834 0.68 0.318706
Target:  5'- -gGcGGC-CGCCACCAcGGCgAgACCAc -3'
miRNA:   3'- uaC-CCGuGCGGUGGUuCCGgUgUGGU- -5'
18245 3' -60.4 NC_004680.1 + 12322 0.74 0.131929
Target:  5'- -gGGGCGacCGCCGCUucGGGuGCCGCGCCGg -3'
miRNA:   3'- uaCCCGU--GCGGUGG--UUC-CGGUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 59002 0.72 0.16383
Target:  5'- -gGGGCAa-CCACCAAGGacgcaaagucCCACACCGc -3'
miRNA:   3'- uaCCCGUgcGGUGGUUCC----------GGUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 22169 0.72 0.168274
Target:  5'- -cGGGUugucguucACGCCGagccugggguUCGAGGCCGCGCCGa -3'
miRNA:   3'- uaCCCG--------UGCGGU----------GGUUCCGGUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 21945 0.72 0.18226
Target:  5'- gGUGGGCAUGgCGCCGuGGCC-CACa- -3'
miRNA:   3'- -UACCCGUGCgGUGGUuCCGGuGUGgu -5'
18245 3' -60.4 NC_004680.1 + 19518 0.71 0.207857
Target:  5'- -cGGGUgacgGCGCCGCCGGuGGUaACACCAc -3'
miRNA:   3'- uaCCCG----UGCGGUGGUU-CCGgUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 42206 0.7 0.2365
Target:  5'- cUGGGC-UGCCACCA---CCGCACCGu -3'
miRNA:   3'- uACCCGuGCGGUGGUuccGGUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 39825 0.69 0.289122
Target:  5'- -aGGGaGCGCCGCagaGAGcGCCGCACgGa -3'
miRNA:   3'- uaCCCgUGCGGUGg--UUC-CGGUGUGgU- -5'
18245 3' -60.4 NC_004680.1 + 13429 0.68 0.303637
Target:  5'- gGUGGGCAccggucCGCUgguuCCAAGGC-GCACCGc -3'
miRNA:   3'- -UACCCGU------GCGGu---GGUUCCGgUGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.