Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18245 | 3' | -60.4 | NC_004680.1 | + | 750 | 0.7 | 0.242612 |
Target: 5'- cGUGcGGCcUGCCccgacagugaGCCAGGGCCgaACACCAu -3' miRNA: 3'- -UAC-CCGuGCGG----------UGGUUCCGG--UGUGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 2468 | 0.66 | 0.402297 |
Target: 5'- uUGGuGCGCGCCucacgcugaaACgAAcGCCACGCCGc -3' miRNA: 3'- uACC-CGUGCGG----------UGgUUcCGGUGUGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 6006 | 0.68 | 0.326449 |
Target: 5'- -cGGGCGgGuguucaCCACCGGGGCCAC-UCGg -3' miRNA: 3'- uaCCCGUgC------GGUGGUUCCGGUGuGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 11082 | 0.66 | 0.411389 |
Target: 5'- gAUGGGgAgGCCgguAUCAGGGUCGCuGCCGa -3' miRNA: 3'- -UACCCgUgCGG---UGGUUCCGGUG-UGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 11163 | 0.85 | 0.016954 |
Target: 5'- -gGGGC-CGCCACCAAGGCCGC-CCGg -3' miRNA: 3'- uaCCCGuGCGGUGGUUCCGGUGuGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 12268 | 0.66 | 0.405918 |
Target: 5'- -gGGGCGgcuacCGCCACCGucggaacggauaccuGGGCggcaGCGCCGg -3' miRNA: 3'- uaCCCGU-----GCGGUGGU---------------UCCGg---UGUGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 12322 | 0.74 | 0.131929 |
Target: 5'- -gGGGCGacCGCCGCUucGGGuGCCGCGCCGg -3' miRNA: 3'- uaCCCGU--GCGGUGG--UUC-CGGUGUGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 12341 | 0.67 | 0.3758 |
Target: 5'- uUGGGCGggccaguuCGUCACCGAcaccGGaaCCACGCCAc -3' miRNA: 3'- uACCCGU--------GCGGUGGUU----CC--GGUGUGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 12547 | 0.68 | 0.303637 |
Target: 5'- uGUGGcGCACcggcaGCCAUC-GGGCCGcCGCCAc -3' miRNA: 3'- -UACC-CGUG-----CGGUGGuUCCGGU-GUGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 12919 | 0.68 | 0.321787 |
Target: 5'- cUGGGaagcCugGCCAgCCAGGuucggcaacgcgggaGCCGCACCAg -3' miRNA: 3'- uACCC----GugCGGU-GGUUC---------------CGGUGUGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 13142 | 0.66 | 0.393333 |
Target: 5'- gAUGGGCG-GCCuggcgguccccgACCGGaccGCCGCACCAg -3' miRNA: 3'- -UACCCGUgCGG------------UGGUUc--CGGUGUGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 13429 | 0.68 | 0.303637 |
Target: 5'- gGUGGGCAccggucCGCUgguuCCAAGGC-GCACCGc -3' miRNA: 3'- -UACCCGU------GCGGu---GGUUCCGgUGUGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 13852 | 0.67 | 0.3758 |
Target: 5'- uGUGGGCGCGCau---GGGCCGCGaCAg -3' miRNA: 3'- -UACCCGUGCGgugguUCCGGUGUgGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 14156 | 0.66 | 0.402297 |
Target: 5'- -gGuGGCGCGUugauCACUcAGGCgACACCAg -3' miRNA: 3'- uaC-CCGUGCG----GUGGuUCCGgUGUGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 14809 | 0.73 | 0.143159 |
Target: 5'- -gGGGCuuGCCACUccaGGGGCUACAUCGg -3' miRNA: 3'- uaCCCGugCGGUGG---UUCCGGUGUGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 17172 | 0.69 | 0.282071 |
Target: 5'- -gGGGC-CGCCaAUCGAacGGCUGCGCCGg -3' miRNA: 3'- uaCCCGuGCGG-UGGUU--CCGGUGUGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 19518 | 0.71 | 0.207857 |
Target: 5'- -cGGGUgacgGCGCCGCCGGuGGUaACACCAc -3' miRNA: 3'- uaCCCG----UGCGGUGGUU-CCGgUGUGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 19592 | 0.69 | 0.282071 |
Target: 5'- -gGcGGCGcCGUCACCcGGGCCaccaACACCAc -3' miRNA: 3'- uaC-CCGU-GCGGUGGuUCCGG----UGUGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 19884 | 0.68 | 0.331951 |
Target: 5'- -cGGGCcggaagaacaaccaGCcaCCACCAGGGCCACcauuGCCGc -3' miRNA: 3'- uaCCCG--------------UGc-GGUGGUUCCGGUG----UGGU- -5' |
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18245 | 3' | -60.4 | NC_004680.1 | + | 20874 | 0.67 | 0.358803 |
Target: 5'- -cGGGacaACGCCAU--GGGCCuguCACCGg -3' miRNA: 3'- uaCCCg--UGCGGUGguUCCGGu--GUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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