miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18246 5' -60.2 NC_004680.1 + 29414 0.66 0.498517
Target:  5'- gACGACCUCGAcgagaUACGCGaucUGGUGCGGg -3'
miRNA:   3'- -UGUUGGGGCUa----GUGCGCc--GCCGCGUC- -5'
18246 5' -60.2 NC_004680.1 + 29002 0.66 0.498517
Target:  5'- -aAACCgCGAUCGCcacacuCGGCgcgGGCGCGGu -3'
miRNA:   3'- ugUUGGgGCUAGUGc-----GCCG---CCGCGUC- -5'
18246 5' -60.2 NC_004680.1 + 36131 0.66 0.485634
Target:  5'- --cGCCCCGAcaggcggggguuuuUUAUGCGGCGaaacGCGCGc -3'
miRNA:   3'- uguUGGGGCU--------------AGUGCGCCGC----CGCGUc -5'
18246 5' -60.2 NC_004680.1 + 40647 0.66 0.478763
Target:  5'- -gGACUCUGcgCACGUcGUGGCGUGGg -3'
miRNA:   3'- ugUUGGGGCuaGUGCGcCGCCGCGUC- -5'
18246 5' -60.2 NC_004680.1 + 18743 0.66 0.478763
Target:  5'- aACAACCCCaagCugGCGcGCGaCGCGa -3'
miRNA:   3'- -UGUUGGGGcuaGugCGC-CGCcGCGUc -5'
18246 5' -60.2 NC_004680.1 + 22236 0.66 0.469031
Target:  5'- gACAACCCgaaaccgggaGAcUGCGCGcGCGGCGuCGGg -3'
miRNA:   3'- -UGUUGGGg---------CUaGUGCGC-CGCCGC-GUC- -5'
18246 5' -60.2 NC_004680.1 + 57539 0.66 0.469031
Target:  5'- uCAGCggUGGUUugGgUGGCGGCGCGGu -3'
miRNA:   3'- uGUUGggGCUAGugC-GCCGCCGCGUC- -5'
18246 5' -60.2 NC_004680.1 + 12407 0.66 0.459401
Target:  5'- cGCGGCaCCCGAa---GCGGCGGuCGCc- -3'
miRNA:   3'- -UGUUG-GGGCUagugCGCCGCC-GCGuc -5'
18246 5' -60.2 NC_004680.1 + 41651 0.66 0.459401
Target:  5'- gGCAguACaCCGAUUcUGCGGCGGCGacgaAGa -3'
miRNA:   3'- -UGU--UGgGGCUAGuGCGCCGCCGCg---UC- -5'
18246 5' -60.2 NC_004680.1 + 15834 0.66 0.449878
Target:  5'- aGCGACCCgccaaGGUCAauCGUGGU-GCGCAGc -3'
miRNA:   3'- -UGUUGGGg----CUAGU--GCGCCGcCGCGUC- -5'
18246 5' -60.2 NC_004680.1 + 21300 0.66 0.447042
Target:  5'- -aGGCCuCCGAgggggccacgguguUCGCgGUGGUGGCGUGGg -3'
miRNA:   3'- ugUUGG-GGCU--------------AGUG-CGCCGCCGCGUC- -5'
18246 5' -60.2 NC_004680.1 + 36402 0.67 0.440464
Target:  5'- cCAAgCCUGAgguUGCcGCGGCGCAGa -3'
miRNA:   3'- uGUUgGGGCUaguGCGcCGCCGCGUC- -5'
18246 5' -60.2 NC_004680.1 + 35874 0.67 0.431163
Target:  5'- cGCAgcGCUCCGAUagguaCAUGCGGUGGaguccugaGCGGg -3'
miRNA:   3'- -UGU--UGGGGCUA-----GUGCGCCGCCg-------CGUC- -5'
18246 5' -60.2 NC_004680.1 + 14605 0.67 0.431163
Target:  5'- gGCGAuCCCCGcgaaGUCGCcUGGCgaaccGGCGCAGc -3'
miRNA:   3'- -UGUU-GGGGC----UAGUGcGCCG-----CCGCGUC- -5'
18246 5' -60.2 NC_004680.1 + 12201 0.67 0.412912
Target:  5'- aGCcGCCCCG-UC-CGCGGCaGCGUu- -3'
miRNA:   3'- -UGuUGGGGCuAGuGCGCCGcCGCGuc -5'
18246 5' -60.2 NC_004680.1 + 18437 0.67 0.403967
Target:  5'- -gGugUCCGcuAUC-CGCGGCGGCGUg- -3'
miRNA:   3'- ugUugGGGC--UAGuGCGCCGCCGCGuc -5'
18246 5' -60.2 NC_004680.1 + 47700 0.67 0.403967
Target:  5'- uCAGCCCaCGccu-CGaCGGUGGCGCGGu -3'
miRNA:   3'- uGUUGGG-GCuaguGC-GCCGCCGCGUC- -5'
18246 5' -60.2 NC_004680.1 + 9676 0.67 0.403967
Target:  5'- gACGuucuCgCCGAUCGCGCGGCca-GCAGc -3'
miRNA:   3'- -UGUu---GgGGCUAGUGCGCCGccgCGUC- -5'
18246 5' -60.2 NC_004680.1 + 42318 0.67 0.403967
Target:  5'- cGCcACaCCCGucuUCGCGCGGgcacgcugcaCGGUGCGGu -3'
miRNA:   3'- -UGuUG-GGGCu--AGUGCGCC----------GCCGCGUC- -5'
18246 5' -60.2 NC_004680.1 + 25230 0.67 0.395146
Target:  5'- aGCggUUCgGGUCAC-CaGCGGCGCGGa -3'
miRNA:   3'- -UGuuGGGgCUAGUGcGcCGCCGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.