miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18248 5' -56.8 NC_004681.1 + 7264 0.66 0.785266
Target:  5'- -gCGGCCGuccaccUCGGCGcCGAgugCGCCGc -3'
miRNA:   3'- caGCUGGCcu----AGCCGCaGCUa--GUGGC- -5'
18248 5' -56.8 NC_004681.1 + 35745 0.66 0.785266
Target:  5'- -gCGGCgGGAuuUCGuGUGUCGGgaagcgCGCCGa -3'
miRNA:   3'- caGCUGgCCU--AGC-CGCAGCUa-----GUGGC- -5'
18248 5' -56.8 NC_004681.1 + 32175 0.66 0.785266
Target:  5'- uGUCGGCCGGGUCcaGCuucUCGAggaCGCCu -3'
miRNA:   3'- -CAGCUGGCCUAGc-CGc--AGCUa--GUGGc -5'
18248 5' -56.8 NC_004681.1 + 12183 0.66 0.785266
Target:  5'- cGUCuacCCGGAccCGGCGUCGGgcuuccccgcgCGCCGc -3'
miRNA:   3'- -CAGcu-GGCCUa-GCCGCAGCUa----------GUGGC- -5'
18248 5' -56.8 NC_004681.1 + 51304 0.66 0.779592
Target:  5'- -aCGGCCGGggUGGCGUucuuggagagaagcaUGG-CGCCGa -3'
miRNA:   3'- caGCUGGCCuaGCCGCA---------------GCUaGUGGC- -5'
18248 5' -56.8 NC_004681.1 + 19450 0.66 0.775782
Target:  5'- gGUCGACCcGGUCGaacuCGUCGGUCucguCCu -3'
miRNA:   3'- -CAGCUGGcCUAGCc---GCAGCUAGu---GGc -5'
18248 5' -56.8 NC_004681.1 + 24713 0.66 0.775782
Target:  5'- -aCGugCcauGGGUCGGCaucgcaGUCGA-CACCGg -3'
miRNA:   3'- caGCugG---CCUAGCCG------CAGCUaGUGGC- -5'
18248 5' -56.8 NC_004681.1 + 54504 0.66 0.763254
Target:  5'- --aGGCCaagagcuggucccaGGAUCGGUGgcccgaGAUCACCGc -3'
miRNA:   3'- cagCUGG--------------CCUAGCCGCag----CUAGUGGC- -5'
18248 5' -56.8 NC_004681.1 + 47038 0.66 0.756422
Target:  5'- uGUCGcCCGaGUCGGCGgcc-UCACCGu -3'
miRNA:   3'- -CAGCuGGCcUAGCCGCagcuAGUGGC- -5'
18248 5' -56.8 NC_004681.1 + 59587 0.66 0.746563
Target:  5'- aGUCGACCuGAUCacucaGGCGgauggCG-UCACCa -3'
miRNA:   3'- -CAGCUGGcCUAG-----CCGCa----GCuAGUGGc -5'
18248 5' -56.8 NC_004681.1 + 25788 0.67 0.706177
Target:  5'- uUCgGAUCGGcUCGGCGaCGAagccauUCACCGc -3'
miRNA:   3'- cAG-CUGGCCuAGCCGCaGCU------AGUGGC- -5'
18248 5' -56.8 NC_004681.1 + 24450 0.67 0.695892
Target:  5'- cGUUGACCGGcuGUcCGGCaaCGAggCGCCGg -3'
miRNA:   3'- -CAGCUGGCC--UA-GCCGcaGCUa-GUGGC- -5'
18248 5' -56.8 NC_004681.1 + 27316 0.67 0.695892
Target:  5'- -aCGGCCaGGAggGGCG-CGA-CGCCGg -3'
miRNA:   3'- caGCUGG-CCUagCCGCaGCUaGUGGC- -5'
18248 5' -56.8 NC_004681.1 + 9055 0.67 0.684514
Target:  5'- cGUCGGCCaGGAcacugucgcgUCGcugaaguauggccGCGUCG-UCACCGg -3'
miRNA:   3'- -CAGCUGG-CCU----------AGC-------------CGCAGCuAGUGGC- -5'
18248 5' -56.8 NC_004681.1 + 7331 0.67 0.675164
Target:  5'- -aUGGCCuGGAgaagcgCGGUGUCGccGUUACCGg -3'
miRNA:   3'- caGCUGG-CCUa-----GCCGCAGC--UAGUGGC- -5'
18248 5' -56.8 NC_004681.1 + 52620 0.67 0.675164
Target:  5'- cUCGGCCaaGUCGGUgagGUCGAacUCGCCGu -3'
miRNA:   3'- cAGCUGGccUAGCCG---CAGCU--AGUGGC- -5'
18248 5' -56.8 NC_004681.1 + 56211 0.68 0.654287
Target:  5'- aGUCGGuggcCUGGAcCGGCGUCGA-C-CCGa -3'
miRNA:   3'- -CAGCU----GGCCUaGCCGCAGCUaGuGGC- -5'
18248 5' -56.8 NC_004681.1 + 58465 0.68 0.654287
Target:  5'- uGUCGGuaaccuuuCCGuucuuGUCGGUGUUGGUCACCa -3'
miRNA:   3'- -CAGCU--------GGCc----UAGCCGCAGCUAGUGGc -5'
18248 5' -56.8 NC_004681.1 + 39955 0.68 0.643816
Target:  5'- aGUCGAuCCGcGcgcGUCGGCGcCGGgucaacUCACCGg -3'
miRNA:   3'- -CAGCU-GGC-C---UAGCCGCaGCU------AGUGGC- -5'
18248 5' -56.8 NC_004681.1 + 9407 0.68 0.643816
Target:  5'- cGUUGACCGGGUUgccguaGGCGUUGccgaagaaGUUGCCGc -3'
miRNA:   3'- -CAGCUGGCCUAG------CCGCAGC--------UAGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.