Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18252 | 5' | -55.3 | NC_004681.1 | + | 51077 | 0.7 | 0.576011 |
Target: 5'- cGGugUUCCAUUgacgcuuggcgucgGCGUAGGugUaGCCg -3' miRNA: 3'- -CCugAGGGUAGaa------------CGCGUCCugA-CGG- -5' |
|||||||
18252 | 5' | -55.3 | NC_004681.1 | + | 54450 | 0.75 | 0.299556 |
Target: 5'- aGGCgugCCCA-CUUGCGCAGGuACUuagGCCa -3' miRNA: 3'- cCUGa--GGGUaGAACGCGUCC-UGA---CGG- -5' |
|||||||
18252 | 5' | -55.3 | NC_004681.1 | + | 71337 | 0.7 | 0.574948 |
Target: 5'- uGGCUCCg----UGUGCGuGGACUGCCu -3' miRNA: 3'- cCUGAGGguagaACGCGU-CCUGACGG- -5' |
|||||||
18252 | 5' | -55.3 | NC_004681.1 | + | 72252 | 0.66 | 0.784516 |
Target: 5'- uGGACUCCacgaugGCGCGGuauucggcaGCUGCCu -3' miRNA: 3'- -CCUGAGGguagaaCGCGUCc--------UGACGG- -5' |
|||||||
18252 | 5' | -55.3 | NC_004681.1 | + | 72576 | 0.66 | 0.794104 |
Target: 5'- cGGAgUCaaCCAU--UGCGC-GGACUGCa -3' miRNA: 3'- -CCUgAG--GGUAgaACGCGuCCUGACGg -5' |
|||||||
18252 | 5' | -55.3 | NC_004681.1 | + | 75195 | 0.68 | 0.692693 |
Target: 5'- cGGACUCaCCGUCgacaucCGCcuugAGGACaGCCc -3' miRNA: 3'- -CCUGAG-GGUAGaac---GCG----UCCUGaCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home