miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18253 5' -50 NC_004681.1 + 13499 0.66 0.968075
Target:  5'- gGUCCAGgccGUCGCCGcGGUugugcuucUCGAUg -3'
miRNA:   3'- -UAGGUCa--CAGCGGUuUCGuuu-----AGCUG- -5'
18253 5' -50 NC_004681.1 + 14311 0.66 0.968075
Target:  5'- cUUCAG-GUCGCCGAGGCg---CGGg -3'
miRNA:   3'- uAGGUCaCAGCGGUUUCGuuuaGCUg -5'
18253 5' -50 NC_004681.1 + 29849 0.66 0.964548
Target:  5'- --gCAG-GUCGCgGAAGCGc-UCGACa -3'
miRNA:   3'- uagGUCaCAGCGgUUUCGUuuAGCUG- -5'
18253 5' -50 NC_004681.1 + 15267 0.66 0.964548
Target:  5'- cGUCCA-UGUCGaCAccGAGCAGAcCGGCg -3'
miRNA:   3'- -UAGGUcACAGCgGU--UUCGUUUaGCUG- -5'
18253 5' -50 NC_004681.1 + 31098 0.66 0.964548
Target:  5'- aGUCCGca--CGCUcaaGGAGCAGAUCGGCa -3'
miRNA:   3'- -UAGGUcacaGCGG---UUUCGUUUAGCUG- -5'
18253 5' -50 NC_004681.1 + 18363 0.66 0.960757
Target:  5'- -cCCGGUGgCGCCAucgacauGGCAGGccaggCGGCg -3'
miRNA:   3'- uaGGUCACaGCGGUu------UCGUUUa----GCUG- -5'
18253 5' -50 NC_004681.1 + 19115 0.66 0.960757
Target:  5'- uUCCAgGUGUCGCCGucuuGGCGAGc---- -3'
miRNA:   3'- uAGGU-CACAGCGGUu---UCGUUUagcug -5'
18253 5' -50 NC_004681.1 + 6922 0.66 0.956695
Target:  5'- cUUCAGgcUGUCGCCGucacGGUccAUCGACg -3'
miRNA:   3'- uAGGUC--ACAGCGGUu---UCGuuUAGCUG- -5'
18253 5' -50 NC_004681.1 + 16902 0.66 0.952355
Target:  5'- aGUCgGGUGUCGCCAccGAGgA---UGACa -3'
miRNA:   3'- -UAGgUCACAGCGGU--UUCgUuuaGCUG- -5'
18253 5' -50 NC_004681.1 + 47489 0.67 0.942823
Target:  5'- cGUCgCAGgaccgcGUCGCCGuGGCGcGUUGGCg -3'
miRNA:   3'- -UAG-GUCa-----CAGCGGUuUCGUuUAGCUG- -5'
18253 5' -50 NC_004681.1 + 56345 0.67 0.93213
Target:  5'- uGUCgaaGGUGUCGCCcucuuGCAGcucgcucggGUCGACg -3'
miRNA:   3'- -UAGg--UCACAGCGGuuu--CGUU---------UAGCUG- -5'
18253 5' -50 NC_004681.1 + 3604 0.67 0.926342
Target:  5'- aGUCCGGUgaaaucuacggcGUCGCCcgcgacaaGAAGCAGGccgcccucgccuUCGACg -3'
miRNA:   3'- -UAGGUCA------------CAGCGG--------UUUCGUUU------------AGCUG- -5'
18253 5' -50 NC_004681.1 + 5570 0.68 0.92026
Target:  5'- cGUCaCGG-GUCGCCAucAAGCGcaacAGUCGAa -3'
miRNA:   3'- -UAG-GUCaCAGCGGU--UUCGU----UUAGCUg -5'
18253 5' -50 NC_004681.1 + 5042 0.68 0.92026
Target:  5'- cAUCCuGUugaacGUCGCCAAGGCcAAccuggaauUCGGCg -3'
miRNA:   3'- -UAGGuCA-----CAGCGGUUUCGuUU--------AGCUG- -5'
18253 5' -50 NC_004681.1 + 40069 0.68 0.92026
Target:  5'- -gCCGGUGaguugacccggCGCCGAcgcgcGCGGAUCGACu -3'
miRNA:   3'- uaGGUCACa----------GCGGUUu----CGUUUAGCUG- -5'
18253 5' -50 NC_004681.1 + 56577 0.68 0.92026
Target:  5'- -aCCGGgacGUUGCCGAcGCGAAUgGAUg -3'
miRNA:   3'- uaGGUCa--CAGCGGUUuCGUUUAgCUG- -5'
18253 5' -50 NC_004681.1 + 14923 0.69 0.869606
Target:  5'- uUCCAGUacgccuucgGUaaCGCCAAGGCGcccAUCGACc -3'
miRNA:   3'- uAGGUCA---------CA--GCGGUUUCGUu--UAGCUG- -5'
18253 5' -50 NC_004681.1 + 5790 0.69 0.869606
Target:  5'- cUCCAGcccgucaggGUUGaaGAAGCGGAUCGGCa -3'
miRNA:   3'- uAGGUCa--------CAGCggUUUCGUUUAGCUG- -5'
18253 5' -50 NC_004681.1 + 38971 0.69 0.86127
Target:  5'- cUCCAGUGgCGCCA--GCucuccuUCGACg -3'
miRNA:   3'- uAGGUCACaGCGGUuuCGuuu---AGCUG- -5'
18253 5' -50 NC_004681.1 + 6263 0.7 0.806222
Target:  5'- cUCCGGUGUCGCCAccccgaacgaGGGCcg--CGAg -3'
miRNA:   3'- uAGGUCACAGCGGU----------UUCGuuuaGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.