Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18255 | 3' | -61.8 | NC_004681.1 | + | 31391 | 0.66 | 0.464225 |
Target: 5'- -aGGGCuACGGGgCGCGCgacggaCuGCCCg -3' miRNA: 3'- uaCUCGcUGUCCgGCGCGag----GuCGGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 30955 | 0.66 | 0.436253 |
Target: 5'- -cGGGuCGGCGGGCgGCGUgCC-GUCCu -3' miRNA: 3'- uaCUC-GCUGUCCGgCGCGaGGuCGGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 25798 | 0.68 | 0.34267 |
Target: 5'- cUGcGGCGAugucacguaCAGGCCGaCGC-CUGGCCCc -3' miRNA: 3'- uAC-UCGCU---------GUCCGGC-GCGaGGUCGGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 24854 | 0.66 | 0.418154 |
Target: 5'- -cGGGCGGC-GGCCGCcaagGCUCCcuCaCCa -3' miRNA: 3'- uaCUCGCUGuCCGGCG----CGAGGucG-GG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 23956 | 0.66 | 0.436253 |
Target: 5'- cGUGucCGuCAGGCCGCugaUCCAGCUg -3' miRNA: 3'- -UACucGCuGUCCGGCGcg-AGGUCGGg -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 22827 | 0.67 | 0.374974 |
Target: 5'- -cGAGUGGC-GGCCGUGCcgguguucugggUCUGuGCCCa -3' miRNA: 3'- uaCUCGCUGuCCGGCGCG------------AGGU-CGGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 21096 | 0.66 | 0.408396 |
Target: 5'- gAUGAGCGACGGcaauCCGCuggacacGCUCaugacGCCCa -3' miRNA: 3'- -UACUCGCUGUCc---GGCG-------CGAGgu---CGGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 20042 | 0.66 | 0.439927 |
Target: 5'- -gGA-CGGguGGCCGCGCUaccucugcuacggacCCGGCaCCu -3' miRNA: 3'- uaCUcGCUguCCGGCGCGA---------------GGUCG-GG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 17820 | 0.7 | 0.251891 |
Target: 5'- ---cGCGGC-GGCCGCGCaaggcaCCGGCCUc -3' miRNA: 3'- uacuCGCUGuCCGGCGCGa-----GGUCGGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 17409 | 0.69 | 0.305183 |
Target: 5'- cGUGuAGCGucccGCGGGCaCGCGCgCCAGCa- -3' miRNA: 3'- -UAC-UCGC----UGUCCG-GCGCGaGGUCGgg -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 16448 | 0.72 | 0.177262 |
Target: 5'- gGUGGucuCGGCGuGGUgGCGUUCCAGCCCc -3' miRNA: 3'- -UACUc--GCUGU-CCGgCGCGAGGUCGGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 16407 | 0.67 | 0.366708 |
Target: 5'- -aGGGUGAcCAGGCCauGCGCUaCGGCUg -3' miRNA: 3'- uaCUCGCU-GUCCGG--CGCGAgGUCGGg -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 16249 | 0.71 | 0.228245 |
Target: 5'- gAUGAGCGACGGGauG-GCcgCCAGCgCCg -3' miRNA: 3'- -UACUCGCUGUCCggCgCGa-GGUCG-GG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 16161 | 0.66 | 0.445471 |
Target: 5'- -aGGGCGGCAGuCUGCGUUgCGGCg- -3' miRNA: 3'- uaCUCGCUGUCcGGCGCGAgGUCGgg -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 13335 | 0.68 | 0.34267 |
Target: 5'- uUGAcGCGGC-GGUCGCGCUUCuGCUUc -3' miRNA: 3'- uACU-CGCUGuCCGGCGCGAGGuCGGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 12948 | 0.66 | 0.423536 |
Target: 5'- cUGAGCGGCAacgucacgcugaccGGCCugacgucGCGCUcaCCGGCUa -3' miRNA: 3'- uACUCGCUGU--------------CCGG-------CGCGA--GGUCGGg -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 11302 | 0.68 | 0.334914 |
Target: 5'- aAUG-GCGACAGGUagGCGCagaCCAGCUUc -3' miRNA: 3'- -UACuCGCUGUCCGg-CGCGa--GGUCGGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 9619 | 0.67 | 0.400519 |
Target: 5'- -gGGGCGguacaccaGCAGGCCgagGCGCUCUucGGCgCg -3' miRNA: 3'- uaCUCGC--------UGUCCGG---CGCGAGG--UCGgG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 8748 | 0.69 | 0.298073 |
Target: 5'- --uGGUGACGGGCCGCGaggaaaUCaGGUCCg -3' miRNA: 3'- uacUCGCUGUCCGGCGCg-----AGgUCGGG- -5' |
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18255 | 3' | -61.8 | NC_004681.1 | + | 6521 | 0.68 | 0.350555 |
Target: 5'- -aGAcGCGACAggagugcuGGCCGguCGCUUCGGCgCCg -3' miRNA: 3'- uaCU-CGCUGU--------CCGGC--GCGAGGUCG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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