miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18260 5' -52 NC_004681.1 + 69637 0.66 0.931198
Target:  5'- aCuuGCAGucGGGGCa---CGGCCGCCg -3'
miRNA:   3'- -GuuUGUCucUCCCGagaaGCUGGUGG- -5'
18260 5' -52 NC_004681.1 + 8640 0.66 0.925554
Target:  5'- uCGAACcGAaGGGGUUCUggcCGAUgGCCg -3'
miRNA:   3'- -GUUUGuCUcUCCCGAGAa--GCUGgUGG- -5'
18260 5' -52 NC_004681.1 + 31429 0.66 0.919633
Target:  5'- aGGACGGAuugGAGccguaGGCUg--CGACCACCa -3'
miRNA:   3'- gUUUGUCU---CUC-----CCGAgaaGCUGGUGG- -5'
18260 5' -52 NC_004681.1 + 29618 0.66 0.919633
Target:  5'- uGAACucuGAuGGCUCgacgUCGACCACg -3'
miRNA:   3'- gUUUGucuCUcCCGAGa---AGCUGGUGg -5'
18260 5' -52 NC_004681.1 + 40721 0.66 0.913436
Target:  5'- ----gGGAGAGGGC-----GGCCACCa -3'
miRNA:   3'- guuugUCUCUCCCGagaagCUGGUGG- -5'
18260 5' -52 NC_004681.1 + 75793 0.66 0.911524
Target:  5'- gCAGGuCAGAGGGGGUgggggugguugcggUCUcgaaaUCG-CCGCCu -3'
miRNA:   3'- -GUUU-GUCUCUCCCG--------------AGA-----AGCuGGUGG- -5'
18260 5' -52 NC_004681.1 + 56241 0.67 0.900224
Target:  5'- gCGAGCuGcaAGAGGGCgacacCUUCGA-CACCc -3'
miRNA:   3'- -GUUUGuC--UCUCCCGa----GAAGCUgGUGG- -5'
18260 5' -52 NC_004681.1 + 67294 0.67 0.899535
Target:  5'- --uACGGGGAGGGCaucucgcgugaggUCgaacuccUCGACCugGCCg -3'
miRNA:   3'- guuUGUCUCUCCCG-------------AGa------AGCUGG--UGG- -5'
18260 5' -52 NC_004681.1 + 7783 0.67 0.893214
Target:  5'- -uGACGGAcuuGGucgaCUUUUCGACCACCg -3'
miRNA:   3'- guUUGUCUcu-CCc---GAGAAGCUGGUGG- -5'
18260 5' -52 NC_004681.1 + 9124 0.67 0.885939
Target:  5'- -uGGCGuuGcGGGCUCguaccCGACCGCCg -3'
miRNA:   3'- guUUGUcuCuCCCGAGaa---GCUGGUGG- -5'
18260 5' -52 NC_004681.1 + 58826 0.67 0.878405
Target:  5'- cCGGACAGAGGccaacaacCUCUUCGACCcgcACCa -3'
miRNA:   3'- -GUUUGUCUCUccc-----GAGAAGCUGG---UGG- -5'
18260 5' -52 NC_004681.1 + 50326 0.68 0.845803
Target:  5'- aCAAGCc--GAGGGCgccauuggagCUggCGACCACCu -3'
miRNA:   3'- -GUUUGucuCUCCCGa---------GAa-GCUGGUGG- -5'
18260 5' -52 NC_004681.1 + 57927 0.68 0.837072
Target:  5'- gAGAgGGAGGGGccagccccGCUcCUUCG-CCACCu -3'
miRNA:   3'- gUUUgUCUCUCC--------CGA-GAAGCuGGUGG- -5'
18260 5' -52 NC_004681.1 + 59009 0.68 0.833518
Target:  5'- -cGugGGGGAGGGCgcccaccgcgaaUUUGACCACg -3'
miRNA:   3'- guUugUCUCUCCCGag----------AAGCUGGUGg -5'
18260 5' -52 NC_004681.1 + 18288 0.69 0.818973
Target:  5'- --cGCcGGGAGGcGCUCcagGACCGCCa -3'
miRNA:   3'- guuUGuCUCUCC-CGAGaagCUGGUGG- -5'
18260 5' -52 NC_004681.1 + 45778 0.69 0.809625
Target:  5'- uCAAAC-GAGcAGGGUcCaUCGACUACCu -3'
miRNA:   3'- -GUUUGuCUC-UCCCGaGaAGCUGGUGG- -5'
18260 5' -52 NC_004681.1 + 23472 0.69 0.809625
Target:  5'- gCGAACguGGAGGcGGGCaggaggUUGACCACCu -3'
miRNA:   3'- -GUUUG--UCUCU-CCCGaga---AGCUGGUGG- -5'
18260 5' -52 NC_004681.1 + 53358 0.69 0.790381
Target:  5'- -----cGGGAGGGCUauacccUUGGCCGCCu -3'
miRNA:   3'- guuuguCUCUCCCGAga----AGCUGGUGG- -5'
18260 5' -52 NC_004681.1 + 7489 0.7 0.769467
Target:  5'- -cGACGGAcuugggcGGGGGCuUCUucUCGGCCGCg -3'
miRNA:   3'- guUUGUCU-------CUCCCG-AGA--AGCUGGUGg -5'
18260 5' -52 NC_004681.1 + 45174 0.7 0.760307
Target:  5'- --cGCGGcGAGGGC-C-UCGACCGCg -3'
miRNA:   3'- guuUGUCuCUCCCGaGaAGCUGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.