miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18270 5' -54.7 NC_004681.1 + 27261 0.66 0.835246
Target:  5'- uCGugUCGAugUUggaguacccguaGCCcGCCGagaacGCUUGCa -3'
miRNA:   3'- -GCugAGCUugAG------------CGGuCGGU-----CGAACG- -5'
18270 5' -54.7 NC_004681.1 + 14522 0.66 0.826407
Target:  5'- gCGGCguaGAuuUUCGCCucGGCCGccuGCUUGCg -3'
miRNA:   3'- -GCUGag-CUu-GAGCGG--UCGGU---CGAACG- -5'
18270 5' -54.7 NC_004681.1 + 65077 0.66 0.826407
Target:  5'- -cGCUCGggUggUCGCCgaGGUCGGCcugGCa -3'
miRNA:   3'- gcUGAGCuuG--AGCGG--UCGGUCGaa-CG- -5'
18270 5' -54.7 NC_004681.1 + 53195 0.66 0.826407
Target:  5'- aCGACUaCGAGCuccguauguucaUCGCCuccGCUAGCUcagGUg -3'
miRNA:   3'- -GCUGA-GCUUG------------AGCGGu--CGGUCGAa--CG- -5'
18270 5' -54.7 NC_004681.1 + 70880 0.66 0.817369
Target:  5'- gCGACUCaacgGAGCUgaggcggagCGCUaucaaacucaAGCCAGCUgGCa -3'
miRNA:   3'- -GCUGAG----CUUGA---------GCGG----------UCGGUCGAaCG- -5'
18270 5' -54.7 NC_004681.1 + 39200 0.66 0.817369
Target:  5'- uCGACgUCGAGgaCGUCAGCCuggucgacugucAGCUcaccgUGCg -3'
miRNA:   3'- -GCUG-AGCUUgaGCGGUCGG------------UCGA-----ACG- -5'
18270 5' -54.7 NC_004681.1 + 18031 0.66 0.817369
Target:  5'- aCGGCUCGGGCaaCGCCucacGgCAGCgccGCg -3'
miRNA:   3'- -GCUGAGCUUGa-GCGGu---CgGUCGaa-CG- -5'
18270 5' -54.7 NC_004681.1 + 31969 0.66 0.816455
Target:  5'- aGAUUCuGAGCgugaaccagaucaUCGCCAGCauCGGCUcGCu -3'
miRNA:   3'- gCUGAG-CUUG-------------AGCGGUCG--GUCGAaCG- -5'
18270 5' -54.7 NC_004681.1 + 60972 0.66 0.808144
Target:  5'- uGACU--AGCUUGCCAGCCAccGCauaaggGCg -3'
miRNA:   3'- gCUGAgcUUGAGCGGUCGGU--CGaa----CG- -5'
18270 5' -54.7 NC_004681.1 + 52971 0.67 0.793016
Target:  5'- gCGGCUCGGGCacgcgggcaggccgaUgGCCAGCCuuccgcccggaAGCUcaggGCa -3'
miRNA:   3'- -GCUGAGCUUG---------------AgCGGUCGG-----------UCGAa---CG- -5'
18270 5' -54.7 NC_004681.1 + 13164 0.67 0.789168
Target:  5'- gCGGCuUCGAGCUCGgCGaugcgagcuuCCAGCUUGg -3'
miRNA:   3'- -GCUG-AGCUUGAGCgGUc---------GGUCGAACg -5'
18270 5' -54.7 NC_004681.1 + 11476 0.67 0.779438
Target:  5'- -cGCUCGugGACuUCGUCAGCCAGgUcGCc -3'
miRNA:   3'- gcUGAGC--UUG-AGCGGUCGGUCgAaCG- -5'
18270 5' -54.7 NC_004681.1 + 47121 0.67 0.779438
Target:  5'- gGGgUCGGGCUCGUCGGUgGGgaUGg -3'
miRNA:   3'- gCUgAGCUUGAGCGGUCGgUCgaACg -5'
18270 5' -54.7 NC_004681.1 + 71910 0.67 0.759546
Target:  5'- gGACUCGAAUacCGCUAugagcGCUGGCUUGa -3'
miRNA:   3'- gCUGAGCUUGa-GCGGU-----CGGUCGAACg -5'
18270 5' -54.7 NC_004681.1 + 1519 0.67 0.753476
Target:  5'- cCGcUUCGGACUCaccccuggugaccggGCCAGCCuucAGCUggGCg -3'
miRNA:   3'- -GCuGAGCUUGAG---------------CGGUCGG---UCGAa-CG- -5'
18270 5' -54.7 NC_004681.1 + 61950 0.67 0.749406
Target:  5'- uCGuCaUGAACUCGCCGGgCGGCa-GCg -3'
miRNA:   3'- -GCuGaGCUUGAGCGGUCgGUCGaaCG- -5'
18270 5' -54.7 NC_004681.1 + 39623 0.68 0.73915
Target:  5'- uGACgcCGGGaUUGCCAGCCcGCUUGg -3'
miRNA:   3'- gCUGa-GCUUgAGCGGUCGGuCGAACg -5'
18270 5' -54.7 NC_004681.1 + 39884 0.68 0.716236
Target:  5'- uCGACcaggCGGGCggagacccccagCGCgCGGCCAGCU-GCg -3'
miRNA:   3'- -GCUGa---GCUUGa-----------GCG-GUCGGUCGAaCG- -5'
18270 5' -54.7 NC_004681.1 + 18645 0.68 0.707801
Target:  5'- aCGACUUGGACggGUCcGCCAGCggUGa -3'
miRNA:   3'- -GCUGAGCUUGagCGGuCGGUCGa-ACg -5'
18270 5' -54.7 NC_004681.1 + 17752 0.68 0.707801
Target:  5'- gCGGgaUCGAAC-CGCCAGCgGGCcgguaguagUGCg -3'
miRNA:   3'- -GCUg-AGCUUGaGCGGUCGgUCGa--------ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.