Results 1 - 20 of 36 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 29546 | 0.75 | 0.315725 |
Target: 5'- cCGGCUCGGGCaUCGCC-GCCaAGUggGCa -3' miRNA: 3'- -GCUGAGCUUG-AGCGGuCGG-UCGaaCG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 65077 | 0.66 | 0.826407 |
Target: 5'- -cGCUCGggUggUCGCCgaGGUCGGCcugGCa -3' miRNA: 3'- gcUGAGCuuG--AGCGG--UCGGUCGaa-CG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 53195 | 0.66 | 0.826407 |
Target: 5'- aCGACUaCGAGCuccguauguucaUCGCCuccGCUAGCUcagGUg -3' miRNA: 3'- -GCUGA-GCUUG------------AGCGGu--CGGUCGAa--CG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 39200 | 0.66 | 0.817369 |
Target: 5'- uCGACgUCGAGgaCGUCAGCCuggucgacugucAGCUcaccgUGCg -3' miRNA: 3'- -GCUG-AGCUUgaGCGGUCGG------------UCGA-----ACG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 18031 | 0.66 | 0.817369 |
Target: 5'- aCGGCUCGGGCaaCGCCucacGgCAGCgccGCg -3' miRNA: 3'- -GCUGAGCUUGa-GCGGu---CgGUCGaa-CG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 31969 | 0.66 | 0.816455 |
Target: 5'- aGAUUCuGAGCgugaaccagaucaUCGCCAGCauCGGCUcGCu -3' miRNA: 3'- gCUGAG-CUUG-------------AGCGGUCG--GUCGAaCG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 1519 | 0.67 | 0.753476 |
Target: 5'- cCGcUUCGGACUCaccccuggugaccggGCCAGCCuucAGCUggGCg -3' miRNA: 3'- -GCuGAGCUUGAG---------------CGGUCGG---UCGAa-CG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 61950 | 0.67 | 0.749406 |
Target: 5'- uCGuCaUGAACUCGCCGGgCGGCa-GCg -3' miRNA: 3'- -GCuGaGCUUGAGCGGUCgGUCGaaCG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 39884 | 0.68 | 0.716236 |
Target: 5'- uCGACcaggCGGGCggagacccccagCGCgCGGCCAGCU-GCg -3' miRNA: 3'- -GCUGa---GCUUGa-----------GCG-GUCGGUCGAaCG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 29749 | 0.68 | 0.69613 |
Target: 5'- aGAUgUCGAGCgcuuccgCGaCCugcugccaggugcAGCCAGCUUGCa -3' miRNA: 3'- gCUG-AGCUUGa------GC-GG-------------UCGGUCGAACG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 10453 | 0.69 | 0.643452 |
Target: 5'- gCGGCguUCGAuCUCGCCAaCCuGCUUGg -3' miRNA: 3'- -GCUG--AGCUuGAGCGGUcGGuCGAACg -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 67138 | 0.69 | 0.632634 |
Target: 5'- gCGugUUGGuGCUggagauggUGCCAGUgAGCUUGCg -3' miRNA: 3'- -GCugAGCU-UGA--------GCGGUCGgUCGAACG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 60683 | 0.7 | 0.620734 |
Target: 5'- gCGGCcucgUCGAGCaccacguUCGUCGGCCAGCggcccgagGCg -3' miRNA: 3'- -GCUG----AGCUUG-------AGCGGUCGGUCGaa------CG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 50666 | 0.7 | 0.611006 |
Target: 5'- cCGGCgUUGggUuUCGCCAGCCAcaGCUUcaGCg -3' miRNA: 3'- -GCUG-AGCuuG-AGCGGUCGGU--CGAA--CG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 50990 | 0.7 | 0.568029 |
Target: 5'- cCGACUCGAguauugGCagGCC-GCCuGCUUGUc -3' miRNA: 3'- -GCUGAGCU------UGagCGGuCGGuCGAACG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 61175 | 0.71 | 0.546811 |
Target: 5'- -aGCUCGGGgUCGgCGGUCAGCgUGCc -3' miRNA: 3'- gcUGAGCUUgAGCgGUCGGUCGaACG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 48328 | 0.72 | 0.465013 |
Target: 5'- gGACUggCGAGCcUCGgCgagGGCCAGCUUGUa -3' miRNA: 3'- gCUGA--GCUUG-AGCgG---UCGGUCGAACG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 6321 | 0.73 | 0.417235 |
Target: 5'- uCGACUCGGACuUCGCCucCCAGUcggGCu -3' miRNA: 3'- -GCUGAGCUUG-AGCGGucGGUCGaa-CG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 67367 | 0.74 | 0.402589 |
Target: 5'- aCGACggaGAACUCGgCguugcggugcggcggGGCCAGCUUGUu -3' miRNA: 3'- -GCUGag-CUUGAGCgG---------------UCGGUCGAACG- -5' |
|||||||
18270 | 5' | -54.7 | NC_004681.1 | + | 27261 | 0.66 | 0.835246 |
Target: 5'- uCGugUCGAugUUggaguacccguaGCCcGCCGagaacGCUUGCa -3' miRNA: 3'- -GCugAGCUugAG------------CGGuCGGU-----CGAACG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home