Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18271 | 3' | -59.8 | NC_004681.1 | + | 66850 | 0.66 | 0.539921 |
Target: 5'- --gGCGGCGUUGCc---ACCGGCCUUc -3' miRNA: 3'- aggCGCCGCAGUGccuuUGGCCGGAA- -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 65075 | 0.66 | 0.570718 |
Target: 5'- cCCGCucgGGUgGUCGCcGAggUCGGCCUg -3' miRNA: 3'- aGGCG---CCG-CAGUGcCUuuGGCCGGAa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 63192 | 0.68 | 0.414934 |
Target: 5'- gUCCGCGGCGgagauCGGGAAgagguUCGGCUUc -3' miRNA: 3'- -AGGCGCCGCagu--GCCUUU-----GGCCGGAa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 61846 | 0.67 | 0.480222 |
Target: 5'- gCCGCGGUcuGguggCGCGcGAGGgCGGCCUc -3' miRNA: 3'- aGGCGCCG--Ca---GUGC-CUUUgGCCGGAa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 56411 | 0.67 | 0.5187 |
Target: 5'- uUCCGCaGCG-CACaccuguuGGAGGCgGGCCg- -3' miRNA: 3'- -AGGCGcCGCaGUG-------CCUUUGgCCGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 54961 | 0.68 | 0.414934 |
Target: 5'- gCCGCGGuCGUCcuugGCGucAGCCGGUCg- -3' miRNA: 3'- aGGCGCC-GCAG----UGCcuUUGGCCGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 53512 | 0.67 | 0.48996 |
Target: 5'- aCCGCGGUGacaUCGCGGGcgucaAGCucaaCGGCCa- -3' miRNA: 3'- aGGCGCCGC---AGUGCCU-----UUG----GCCGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 51422 | 0.74 | 0.179408 |
Target: 5'- cUCCGCGGCGacggugaugacgUCgGCGGAcucACCGGCCa- -3' miRNA: 3'- -AGGCGCCGC------------AG-UGCCUu--UGGCCGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 49432 | 0.66 | 0.56452 |
Target: 5'- cCCGCGGCGcCgccgugGCGGAcggugagguugugcaGACCGcccGCCUUg -3' miRNA: 3'- aGGCGCCGCaG------UGCCU---------------UUGGC---CGGAA- -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 49228 | 0.66 | 0.529777 |
Target: 5'- cCCGCGuCGUCuuGGucACCGGCUc- -3' miRNA: 3'- aGGCGCcGCAGugCCuuUGGCCGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 46727 | 0.69 | 0.406057 |
Target: 5'- uUCCGCGGCaucgacgcuGUCAUGaacgugguGGGACCGGCgCUg -3' miRNA: 3'- -AGGCGCCG---------CAGUGC--------CUUUGGCCG-GAa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 42296 | 0.69 | 0.371772 |
Target: 5'- aUCCGCuccaguucGGCGUgACGGAGGuuGGCa-- -3' miRNA: 3'- -AGGCG--------CCGCAgUGCCUUUggCCGgaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 41964 | 0.67 | 0.523724 |
Target: 5'- cCUGCgagguaGGCGUgggacaggucggcucCGCGGAGAUCGGCCc- -3' miRNA: 3'- aGGCG------CCGCA---------------GUGCCUUUGGCCGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 40560 | 0.7 | 0.347385 |
Target: 5'- gCCGCGGCGuUCAauGucAUCGGCCg- -3' miRNA: 3'- aGGCGCCGC-AGUgcCuuUGGCCGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 40245 | 0.75 | 0.157578 |
Target: 5'- aUCUGCGGCGUCGCGG---CCuGCCUg -3' miRNA: 3'- -AGGCGCCGCAGUGCCuuuGGcCGGAa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 39960 | 0.71 | 0.28807 |
Target: 5'- aUCCGCGcGCGUCGgcgcCGGGucaacucaccGGCuCGGCCUUg -3' miRNA: 3'- -AGGCGC-CGCAGU----GCCU----------UUG-GCCGGAA- -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 39327 | 0.68 | 0.447849 |
Target: 5'- gCCGCGGCG-CACGGugagcugacagucGACCaGGCUg- -3' miRNA: 3'- aGGCGCCGCaGUGCCu------------UUGG-CCGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 39264 | 0.7 | 0.316682 |
Target: 5'- cUCCGCGGCc---CGGAuGCCGGUCUc -3' miRNA: 3'- -AGGCGCCGcaguGCCUuUGGCCGGAa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 39216 | 0.7 | 0.347385 |
Target: 5'- gUCGCGGCgGUCGCGGAAgguguuGCCcgcgcagguGGCCa- -3' miRNA: 3'- aGGCGCCG-CAGUGCCUU------UGG---------CCGGaa -5' |
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18271 | 3' | -59.8 | NC_004681.1 | + | 33402 | 0.66 | 0.560398 |
Target: 5'- gUCC-CGGCGUacacCGCGGcgcGACCGGCg-- -3' miRNA: 3'- -AGGcGCCGCA----GUGCCu--UUGGCCGgaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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