miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18273 3' -58.4 NC_004681.1 + 19238 0.66 0.620529
Target:  5'- uUGCCCAGcuuCuuGGGGGuCCAGgCGUCc -3'
miRNA:   3'- -ACGGGUCuauGcgCCUCC-GGUC-GUAG- -5'
18273 3' -58.4 NC_004681.1 + 67883 0.66 0.608776
Target:  5'- cGCCCGGGUggaggcuACgGCcGAGGCUAGgCAUUg -3'
miRNA:   3'- aCGGGUCUA-------UG-CGcCUCCGGUC-GUAG- -5'
18273 3' -58.4 NC_004681.1 + 23480 0.66 0.588535
Target:  5'- aGCCaCuGGcgaACGUGGAGGCgGGCAg- -3'
miRNA:   3'- aCGG-GuCUa--UGCGCCUCCGgUCGUag -5'
18273 3' -58.4 NC_004681.1 + 54446 0.66 0.577928
Target:  5'- gUGCCCAcuUGCGCaGGuacuuAGGCCacagguggguGGCGUCg -3'
miRNA:   3'- -ACGGGUcuAUGCG-CC-----UCCGG----------UCGUAG- -5'
18273 3' -58.4 NC_004681.1 + 6528 0.66 0.577928
Target:  5'- gGUCCAGAgACGCgacaGGAGuGCUGGCcgGUCg -3'
miRNA:   3'- aCGGGUCUaUGCG----CCUC-CGGUCG--UAG- -5'
18273 3' -58.4 NC_004681.1 + 64360 0.66 0.57687
Target:  5'- gGCCCgcGGAcaagGCGUGGGcgacaauGGCCAccgGCAUCg -3'
miRNA:   3'- aCGGG--UCUa---UGCGCCU-------CCGGU---CGUAG- -5'
18273 3' -58.4 NC_004681.1 + 48763 0.66 0.567364
Target:  5'- gGCCCgccaGGGUucccgccaGCGUGGAGG-CGGUGUCa -3'
miRNA:   3'- aCGGG----UCUA--------UGCGCCUCCgGUCGUAG- -5'
18273 3' -58.4 NC_004681.1 + 52839 0.67 0.546392
Target:  5'- uUGCCCuGAgcuuccGgGCGGaAGGCUGGcCAUCg -3'
miRNA:   3'- -ACGGGuCUa-----UgCGCC-UCCGGUC-GUAG- -5'
18273 3' -58.4 NC_004681.1 + 26830 0.67 0.535998
Target:  5'- aGCCgAGGUugGCcGGGGCgGGCu-- -3'
miRNA:   3'- aCGGgUCUAugCGcCUCCGgUCGuag -5'
18273 3' -58.4 NC_004681.1 + 58988 0.67 0.535998
Target:  5'- cGCCCAGGUGCucgaagaccucGUGGGGGagGGCGc- -3'
miRNA:   3'- aCGGGUCUAUG-----------CGCCUCCggUCGUag -5'
18273 3' -58.4 NC_004681.1 + 716 0.67 0.525673
Target:  5'- gGCCgAag-GCGCGGAGGaaguucucgaCGGCGUCg -3'
miRNA:   3'- aCGGgUcuaUGCGCCUCCg---------GUCGUAG- -5'
18273 3' -58.4 NC_004681.1 + 26442 0.67 0.505258
Target:  5'- gUGCCCAcaccacuUAUGCaGGucGGUCAGCGUCg -3'
miRNA:   3'- -ACGGGUcu-----AUGCG-CCu-CCGGUCGUAG- -5'
18273 3' -58.4 NC_004681.1 + 54687 0.67 0.505258
Target:  5'- aUGUCCAcGAUGauUGCGGGGGgCAGCu-- -3'
miRNA:   3'- -ACGGGU-CUAU--GCGCCUCCgGUCGuag -5'
18273 3' -58.4 NC_004681.1 + 65993 0.68 0.495179
Target:  5'- cGCCCAGGaucAUGCGcGAGGaCCAGUc-- -3'
miRNA:   3'- aCGGGUCUa--UGCGC-CUCC-GGUCGuag -5'
18273 3' -58.4 NC_004681.1 + 73277 0.68 0.485192
Target:  5'- gUGCCgGGAggUGCGCggcuGGAGuGCCAGUAc- -3'
miRNA:   3'- -ACGGgUCU--AUGCG----CCUC-CGGUCGUag -5'
18273 3' -58.4 NC_004681.1 + 543 0.68 0.475302
Target:  5'- cGgCCAGGUuggacgcccaGCGGAGGCCcuCGUCg -3'
miRNA:   3'- aCgGGUCUAug--------CGCCUCCGGucGUAG- -5'
18273 3' -58.4 NC_004681.1 + 10280 0.68 0.465513
Target:  5'- -aCUCGGAgcCGgGGAGGCCGGUcguGUCg -3'
miRNA:   3'- acGGGUCUauGCgCCUCCGGUCG---UAG- -5'
18273 3' -58.4 NC_004681.1 + 5900 0.69 0.418229
Target:  5'- aGUaCCAGGUugG-GGcGGCCAGCGUUc -3'
miRNA:   3'- aCG-GGUCUAugCgCCuCCGGUCGUAG- -5'
18273 3' -58.4 NC_004681.1 + 64814 0.69 0.418229
Target:  5'- -uUCCAGGUGgGCGGAcccaCCAGCGUCa -3'
miRNA:   3'- acGGGUCUAUgCGCCUcc--GGUCGUAG- -5'
18273 3' -58.4 NC_004681.1 + 52969 0.69 0.40015
Target:  5'- gGCUCGGGcACGCGGGcaggccgauGGCCAGCc-- -3'
miRNA:   3'- aCGGGUCUaUGCGCCU---------CCGGUCGuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.