Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18273 | 3' | -58.4 | NC_004681.1 | + | 19238 | 0.66 | 0.620529 |
Target: 5'- uUGCCCAGcuuCuuGGGGGuCCAGgCGUCc -3' miRNA: 3'- -ACGGGUCuauGcgCCUCC-GGUC-GUAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 67883 | 0.66 | 0.608776 |
Target: 5'- cGCCCGGGUggaggcuACgGCcGAGGCUAGgCAUUg -3' miRNA: 3'- aCGGGUCUA-------UG-CGcCUCCGGUC-GUAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 23480 | 0.66 | 0.588535 |
Target: 5'- aGCCaCuGGcgaACGUGGAGGCgGGCAg- -3' miRNA: 3'- aCGG-GuCUa--UGCGCCUCCGgUCGUag -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 54446 | 0.66 | 0.577928 |
Target: 5'- gUGCCCAcuUGCGCaGGuacuuAGGCCacagguggguGGCGUCg -3' miRNA: 3'- -ACGGGUcuAUGCG-CC-----UCCGG----------UCGUAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 6528 | 0.66 | 0.577928 |
Target: 5'- gGUCCAGAgACGCgacaGGAGuGCUGGCcgGUCg -3' miRNA: 3'- aCGGGUCUaUGCG----CCUC-CGGUCG--UAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 64360 | 0.66 | 0.57687 |
Target: 5'- gGCCCgcGGAcaagGCGUGGGcgacaauGGCCAccgGCAUCg -3' miRNA: 3'- aCGGG--UCUa---UGCGCCU-------CCGGU---CGUAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 48763 | 0.66 | 0.567364 |
Target: 5'- gGCCCgccaGGGUucccgccaGCGUGGAGG-CGGUGUCa -3' miRNA: 3'- aCGGG----UCUA--------UGCGCCUCCgGUCGUAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 52839 | 0.67 | 0.546392 |
Target: 5'- uUGCCCuGAgcuuccGgGCGGaAGGCUGGcCAUCg -3' miRNA: 3'- -ACGGGuCUa-----UgCGCC-UCCGGUC-GUAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 26830 | 0.67 | 0.535998 |
Target: 5'- aGCCgAGGUugGCcGGGGCgGGCu-- -3' miRNA: 3'- aCGGgUCUAugCGcCUCCGgUCGuag -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 58988 | 0.67 | 0.535998 |
Target: 5'- cGCCCAGGUGCucgaagaccucGUGGGGGagGGCGc- -3' miRNA: 3'- aCGGGUCUAUG-----------CGCCUCCggUCGUag -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 716 | 0.67 | 0.525673 |
Target: 5'- gGCCgAag-GCGCGGAGGaaguucucgaCGGCGUCg -3' miRNA: 3'- aCGGgUcuaUGCGCCUCCg---------GUCGUAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 26442 | 0.67 | 0.505258 |
Target: 5'- gUGCCCAcaccacuUAUGCaGGucGGUCAGCGUCg -3' miRNA: 3'- -ACGGGUcu-----AUGCG-CCu-CCGGUCGUAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 54687 | 0.67 | 0.505258 |
Target: 5'- aUGUCCAcGAUGauUGCGGGGGgCAGCu-- -3' miRNA: 3'- -ACGGGU-CUAU--GCGCCUCCgGUCGuag -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 65993 | 0.68 | 0.495179 |
Target: 5'- cGCCCAGGaucAUGCGcGAGGaCCAGUc-- -3' miRNA: 3'- aCGGGUCUa--UGCGC-CUCC-GGUCGuag -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 73277 | 0.68 | 0.485192 |
Target: 5'- gUGCCgGGAggUGCGCggcuGGAGuGCCAGUAc- -3' miRNA: 3'- -ACGGgUCU--AUGCG----CCUC-CGGUCGUag -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 543 | 0.68 | 0.475302 |
Target: 5'- cGgCCAGGUuggacgcccaGCGGAGGCCcuCGUCg -3' miRNA: 3'- aCgGGUCUAug--------CGCCUCCGGucGUAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 10280 | 0.68 | 0.465513 |
Target: 5'- -aCUCGGAgcCGgGGAGGCCGGUcguGUCg -3' miRNA: 3'- acGGGUCUauGCgCCUCCGGUCG---UAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 5900 | 0.69 | 0.418229 |
Target: 5'- aGUaCCAGGUugG-GGcGGCCAGCGUUc -3' miRNA: 3'- aCG-GGUCUAugCgCCuCCGGUCGUAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 64814 | 0.69 | 0.418229 |
Target: 5'- -uUCCAGGUGgGCGGAcccaCCAGCGUCa -3' miRNA: 3'- acGGGUCUAUgCGCCUcc--GGUCGUAG- -5' |
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18273 | 3' | -58.4 | NC_004681.1 | + | 52969 | 0.69 | 0.40015 |
Target: 5'- gGCUCGGGcACGCGGGcaggccgauGGCCAGCc-- -3' miRNA: 3'- aCGGGUCUaUGCGCCU---------CCGGUCGuag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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