miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18273 5' -53.7 NC_004681.1 + 50143 0.66 0.899744
Target:  5'- -cGAcGGCGGCAUCuCCGuccaagucggcaAAUGAGCGAc -3'
miRNA:   3'- ccCUaCCGCUGUGG-GGC------------UUACUUGCU- -5'
18273 5' -53.7 NC_004681.1 + 48767 0.66 0.899744
Target:  5'- aGGAcGGCGgcuACACCUgGAGUGAGgccguCGAg -3'
miRNA:   3'- cCCUaCCGC---UGUGGGgCUUACUU-----GCU- -5'
18273 5' -53.7 NC_004681.1 + 34618 0.66 0.899744
Target:  5'- gGGGAU-GCGGC-CCuuGggUGAcACGu -3'
miRNA:   3'- -CCCUAcCGCUGuGGggCuuACU-UGCu -5'
18273 5' -53.7 NC_004681.1 + 51703 0.66 0.892873
Target:  5'- cGGGcgGGgGAUucuCCCCGGG-GAACc- -3'
miRNA:   3'- -CCCuaCCgCUGu--GGGGCUUaCUUGcu -5'
18273 5' -53.7 NC_004681.1 + 12661 0.66 0.890762
Target:  5'- uGGAUGGgGGCACCCCcaucaccgccgcgGAGCu- -3'
miRNA:   3'- cCCUACCgCUGUGGGGcuua---------CUUGcu -5'
18273 5' -53.7 NC_004681.1 + 9448 0.66 0.878378
Target:  5'- cGGGGUGGUgacaaccggGACGCCCCaGAUGuucuuGCc- -3'
miRNA:   3'- -CCCUACCG---------CUGUGGGGcUUACu----UGcu -5'
18273 5' -53.7 NC_004681.1 + 27430 0.66 0.876119
Target:  5'- gGGGgcGGUGugACCUCGAugucgugcgccacgGUGAuguucaccGCGAu -3'
miRNA:   3'- -CCCuaCCGCugUGGGGCU--------------UACU--------UGCU- -5'
18273 5' -53.7 NC_004681.1 + 59013 0.66 0.870764
Target:  5'- gGGGAgGGCGccCACCgCGAAuuUGAccACGAc -3'
miRNA:   3'- -CCCUaCCGCu-GUGGgGCUU--ACU--UGCU- -5'
18273 5' -53.7 NC_004681.1 + 42408 0.67 0.862914
Target:  5'- gGGGAUGGUgagcuugacGAUGCuCCCGAGcUGGGCc- -3'
miRNA:   3'- -CCCUACCG---------CUGUG-GGGCUU-ACUUGcu -5'
18273 5' -53.7 NC_004681.1 + 48038 0.67 0.854014
Target:  5'- cGGAUGGCGACugucuucGCCCCau----GCGAg -3'
miRNA:   3'- cCCUACCGCUG-------UGGGGcuuacuUGCU- -5'
18273 5' -53.7 NC_004681.1 + 45250 0.67 0.845689
Target:  5'- aGGGGcaggugcucgUGGCagcaccgGACGCCCCGcccGUGAccgGCGAa -3'
miRNA:   3'- -CCCU----------ACCG-------CUGUGGGGCu--UACU---UGCU- -5'
18273 5' -53.7 NC_004681.1 + 16782 0.67 0.838013
Target:  5'- cGGugccUGGCGGCAuCCCCGGcAUGccCGAg -3'
miRNA:   3'- cCCu---ACCGCUGU-GGGGCU-UACuuGCU- -5'
18273 5' -53.7 NC_004681.1 + 14644 0.67 0.83715
Target:  5'- uGGcGGUGGCGGCgaugccgACCCCGuugagGAuCGAc -3'
miRNA:   3'- -CC-CUACCGCUG-------UGGGGCuua--CUuGCU- -5'
18273 5' -53.7 NC_004681.1 + 60495 0.67 0.832803
Target:  5'- cGGGAuuagUGGCGGCAauggcggucacaucuUCCCGAccGAgACGGg -3'
miRNA:   3'- -CCCU----ACCGCUGU---------------GGGGCUuaCU-UGCU- -5'
18273 5' -53.7 NC_004681.1 + 35904 0.67 0.829289
Target:  5'- cGGAucguccUGGCcGCGCCCCGcAAUGGagucggACGAa -3'
miRNA:   3'- cCCU------ACCGcUGUGGGGC-UUACU------UGCU- -5'
18273 5' -53.7 NC_004681.1 + 31451 0.67 0.829289
Target:  5'- -uGGUGaGCGAUcuuCCCCGggUaGGACGGa -3'
miRNA:   3'- ccCUAC-CGCUGu--GGGGCuuA-CUUGCU- -5'
18273 5' -53.7 NC_004681.1 + 62101 0.67 0.820366
Target:  5'- ----gGGCGGCAUCCUGcugcagucGGUGGACGAg -3'
miRNA:   3'- cccuaCCGCUGUGGGGC--------UUACUUGCU- -5'
18273 5' -53.7 NC_004681.1 + 45568 0.67 0.820366
Target:  5'- aGGGUGGCca-GCUCgGAGUGGACGc -3'
miRNA:   3'- cCCUACCGcugUGGGgCUUACUUGCu -5'
18273 5' -53.7 NC_004681.1 + 45032 0.67 0.820366
Target:  5'- -cGGUGGCGGCuCCaCCGcGUGGggGCGAg -3'
miRNA:   3'- ccCUACCGCUGuGG-GGCuUACU--UGCU- -5'
18273 5' -53.7 NC_004681.1 + 45205 0.68 0.811254
Target:  5'- -cGAcGGCGucgGCCCCGGucuUGAGCGAg -3'
miRNA:   3'- ccCUaCCGCug-UGGGGCUu--ACUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.